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. 2009 Oct 12;6:165. doi: 10.1186/1743-422X-6-165

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Copyright © 2009 Pickett and Lefkowitz; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Phylogenetic Trees Showing Recombination. Shows the Bayesian consensus trees for (A) the NS5 coding region lacking the recombinant region and (B) only the recombinant region. The labels for all non-recombinant taxa were removed for clarity. The translocation of the AnMg798 sequence from the lineage 2 clade in panel A to the lineage 1a clade in panel B indicates the presence of recombinant sequence within this region. Major parent, minor parent, and daughter sequences are shaded in blue, green, and red respectively. Lineages are indicated as in figure 1. Branch lengths are proportional to distance (the number of nucleotide changes), and the distance scale for the number of changes is provided at the top each panel.