Table 5.
Specificity of McCT PCR product detection: mammalian species-specific probes
PCR template | Species-specific probe/gene region |
|||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Human |
Mouse |
Rat |
Monkey |
Chinese hamster | Dog | Cat | Guinea pig | Rabbit | Quality control | |||||
β-globin | TSPYL1 | β-globin | 16S | β-globin | 16S | β-globin | 16S | 16S | 16S | 16S | 16S | 16S | PolA | |
Human | 701a | 189 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 324 |
Mouse | 0 | 3 | 68 | 739 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 229 |
Rat | 0 | 0 | 0 | 0 | 496 | 62 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 231 |
Green monkey | 2 | 14b | 0 | 1 | 0 | 0 | 310 | 374 | 0 | 0 | 0 | 0 | 0 | 147 |
Chinese hamster | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 672 | 0 | 0 | 0 | 0 | 207 |
Dog | 0 | 0 | 0 | 0 | 1 | 2 | 1 | 0 | 1 | 1166 | 2 | 0 | 2 | 182 |
Cat | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 866 | 1 | 0 | 174 |
Guinea pig | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1088 | 0 | 220 |
Rabbit | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 155 | 173 |
H2O-PCR | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
aEach line represents hybridization results of the multiplex PCR product of one template hybridized to a mixture of 45 distinct probes; results of only 14 probes are shown, no positive signals were observed with any of the 31 other probes; numbers are net MFI values computed as described in ‘Materials and Methods’ section, values >5 are considered positive.
bWeak cross-reactivity.