Table 2.
Structure comparisons of nikD with other proteins using Dali (Holm and Sander, 1993).
| Pdb code | Dali Z scorea | Rmsd (Å) | No. equivalent residues | % Identity | Enzyme |
|---|---|---|---|---|---|
| 1el5-A | 47.0 | 1.8 | 365 | 22 | monomeric sarcosine oxidase |
| 1y56-B | 37.7 | 2.8 | 355 | 18 | L-proline dehydrogenase |
| 2gag-B | 37.2 | 2.6 | 349 | 20 | heterotetrameric sarcosine oxidase |
| 1ng3-A | 35.5 | 2.9 | 344 | 17 | glycine oxidase |
| 1pj5-A | 34.4 | 3.0 | 352 | 15 | N,N-dimethylglycine oxidase |
| 1an9-A | 24.5 | 3.2 | 304 | 14 | D-amino acid oxidase |
a
The DALI Z-score is a measure of the strength of structural similarity in standard deviations above expected with only values above 2 reported.