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. Author manuscript; available in PMC: 2010 Mar 1.
Published in final edited form as: Chem Res Toxicol. 2009 Mar;22(3):574–583. doi: 10.1021/tx8003449

Table 3.

Steady-state kinetic parameters for nucleotide incorporation mediated by yeast pol η opposite Tg and 8-oxodG in tandem lesion-containing substrates and opposite undamaged dG and dT in the control substratea

Substrates dNTP kcat (min-1) km (nM) kcat / Km (nM-1 min-1) finc
5′-Tg-(8-oxodG)-3′ 14 mer Primer: 5′ - GCTAGGATCATAGC - 3′

dATP 0.29 ± 0.02 (2.3 ± 0.3) × 103 1.3 × 10-4 4.5 × 10-2
dGTP 0.060 ± 0.005 (4.9 ± 0.9) × 103 1.2 × 10-5 4.1 × 10-3
dCTP 0.099 ± 0.029 34 ± 16 2.9 × 10-3 1.0
dTTP 0.060 ± 0.005 (5.8 ± 0.7) × 103 1.0 × 10-5 3.4 × 10-3

15 mer Primer: 5′ - GCTAGGATCATAGCC - 3′

dATP 0.063 ± 0.001 (2.9 ± 0.7) × 102 2.2 × 10-4 1.0
dGTP 0.16 ± 0.01 (6.3 ± 0.4) × 104 2.5 × 10-6 1.1 × 10-2
dCTP 0.11 ± 0.002 (6.3 ± 0.5) × 105 1.7 × 10-7 7.7 × 10-4
dTTP 0.13 ± 0.01 (2.7 ± 0.7) × 105 4.8 × 10-6 2.2 × 10-3

5′-(8-oxodG)-Tg-3′ 14 mer Primer: 5′ - GCTAGGATCATAGC - 3′

dATP 0.12 ± 0.002 (3.3 ± 0.1) × 102 3.6 × 10-4 1.0
dGTP 0.048 ± 0.002 (1.4 ± 0.1) × 104 3.4 × 10-6 9.4 × 10-3
dCTP 0.063 ± 0.005 (2.5 ± 0.4) × 103 2.5 × 10-5 6.9 × 10-2
dTTP 0.080 ± 0.002 (5.3 ± 0.5) × 104 1.5 × 10-6 4.2 × 10-3

15 mer Primer: 5′ - GCTAGGATCATAGCA - 3′

dATP 0.084 ± 0.002 (1.1 ± 0.1) × 105 7.6 × 10-7 6.9 × 10-3
dGTP 0.15 ± 0.01 (9.6 ± 0.5) × 105 1.6 × 10-7 1.5 × 10-3
dCTP 0.046 ± 0.005 (4.1 ± 0.6) × 102 1.1 × 10-4 1.0
dTTP 0.17 ± 0.02 (6.4 ± 0.5) × 105 2.7 × 10-7 2.5 × 10-3

5′-dG-dT-3′ 14 mer Primer: 5′ - GCTAGGATCATAGC - 3′

dATP 0.055 ± 0.005 36 ± 1 1.5 × 10-3 1.0
dGTP 0.080 ± 0.005 (5.9 ± 0.5) × 104 1.4 × 10-6 9.3 × 10-4
dCTP 0.077 ± 0.010 (4.1 ± 0.1) × 103 1.9 × 10-5 1.3 × 10-2
dTTP 0.13 ± 0.003 (1.1 ± 0.9) × 105 1.2 × 10-6 8.0 × 10-4

15 mer Primer: 5′ - GCTAGGATCATAGCA - 3′

dATP 0.23 ± 0.02 (5.2 ± 0.3) × 105 4.4 × 10-7 4.6 × 10-5
dGTP 0.38 ± 0.01 (5.8 ± 0.07) × 105 6.7 × 10-7 7.1 × 10-5
dCTP 0.087 ± 0.010 9.2 ± 2.5 9.5 × 10-3 1.0
dTTP 0.087 ± 0.010 (1.8 ± 0.3) × 104 4.8 × 10-6 5.1 × 10-4
a

kcat and Km are average values based on three independent measurements