TABLE 1.
Strand† | RhCMV ORF |
HCMV ORF |
from | to | Length (aa) |
Exon | ID with RhCMV |
ID with HCMV |
Comment |
---|---|---|---|---|---|---|---|---|---|
C | None | None | 1 | 747 | 249 | ||||
None | None | 2 | 793 | 264 | |||||
None | None | 3 | 761 | 253 | |||||
None | None | 9459 | 9812 | 118 | |||||
None | None | 11411 | 11848 | 146 | |||||
None | None | 12311 | 12619 | 102 | |||||
W | RhUL128 | UL128 | 722 | 1175 | 150 | 3 | 100 | 44* | * Homology between aa 15–134 of HCMV UL128 |
1261 | 1398 | 46 | 2 | ||||||
1487 | 1626 | 47 | 1 | ||||||
rh157.4 | NH | 1628 | 2359 | 243 | 100* | *14aa longer than 180.92 rh157.4 | |||
RhUL130 | UL130 | 2481 | 2762 | 93 | 97 | 44 | * Homology between aa 56–114 of HCMV UL130 | ||
RhUL131a | UL131A | 2759 | 3020 | 86 | 2 | 99 | 31 | ||
3103 | 3359 | 86 | 1 | ||||||
RhUL132 (rh160) |
UL132 | 3403 | 4068 | 221 | 99 | 31 | |||
RhUL148 (rh159) |
UL148 | 4134 | 5114 | 326 | 99 | 30* | * Homology between aa 14–264 of HCMV UL148 | ||
RhUL147 (rh158) |
UL147 | 5319 | 5780 | 153 | 96 | 36 | CXC motif | ||
RhUL146 | UL146 | 5831 | 6175 | 114 | 92/58/100* | 27/33/27 | CXC motif; * CNPRC 1/CNPRC 2/22659 (see Fig. 2F) | ||
RhUL146aE | NH | 6252 | 6348 | 31 | 2 | CXC motif | |||
6425 | 6615 | 63 | 1 | ||||||
RhUL146bE | NH | 6738 | 7064 | 108 | CXC motif | ||||
rh161.1E | NH | 7188 | 7520 | 110 | CXC motif; possible tandem duplication of rh161.2 (see text) | ||||
rh161.2 | NH | 7602 | 8117 | 157– 171 |
74–100 | CXC motif; annotated as rh161 in 68-1; 12–25 aa longer than rh161 of 68-1; see Fig. 2A and text |
|||
RhUL145 (rh162) |
UL145 | 8202 | 8507 | 101 | 100 | 65 | |||
RhUL144 (rh163) |
UL144 | 8925 | 9440 | 171 | 98 | 31 | |||
RhUL141 (rh164) |
UL141 | 9643 | 10935 | 430 | 99 | 44 | |||
rh165 | NH | 11396 | 11827 | 143 | 100 | possible tandem duplication of rh166 | |||
rh166 | NH | 11872 | 12396 | 174 | 100 | possible tandem duplication of rh165 | |||
rh167 | NH | 12527 | 13030 | 167 | 98 |
C = Coding strand (left-to-right transcription); W = complementary strand (right-to-left transcription)
NH: no homologue in HCMV
E: ORFs found in segment E of RhCMVCNPRC and RhCMV22659 (see Fig. 1)