Skip to main content
. Author manuscript; available in PMC: 2010 Sep 15.
Published in final edited form as: Biochemistry. 2009 Sep 15;48(36):8540–8550. doi: 10.1021/bi900860w

Table 1.

Thermodynamic Parameters of Duplex Formation for R5a Labeled CS Duplexes

labeled position Δb (kcal/mol) Δb (cal/(mol·K)) Δ37°cc (kcal/mol) ΔΔ37°cd (kcal/mol)
(A) Wild-Type CS Duplexa
none −69 ± 2 −192 ± 8 −9.4
CS7 −68 ± 5 −191 ± 17 −9.2 0.2
CS9 −63 ± 5 −174 ± 15 −8.8 0.6
CS12 −67 ± 2 −186 ± 7 −9.2 0.2
CS14 −64 ± 2 −176 ± 5 −9.1 0.3
(B) Mutant CS Duplexe
none −75 ± 3 −214 ± 8 −9.1
CS2_1A −80 ± 1 −227 ± 5 −9.4 −0.3
CS24_12T −78 ± 3 −222 ± 9 −9.0 0.1
a

DNA sequence as shown in Figure 1A.

b

Averages and errors were obtained based on results from multiple sets of melting measurements.

c

Δ37°C = Δ − 310 K × Δ. Averages of Δ37°C value from multiple melting measurements are reported, with errors estimated to be less than ± 0.1 kcal/mol.

d

ΔΔ37°C = Δ37°C (labeled) − Δ37°C (unlabeled).

e

DNA sequence modified at the duplex terminus: C1/G24 to A1/T24.