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. 2009 Sep;10(6):402–415. doi: 10.2174/138920209789177575

Fig. (5).

Fig. (5)

Constructing a profile-csHMM from a multiple RNA sequence alignment. (a) Example of an RNA sequence alignment. The consensus RNA structure has two base-pairs. (b) An ungapped csHMM constructed from the given alignment. (c) The final profile-csHMM that can handle symbol matches, insertions, and deletions.