Table 1.
Sequence and Genomic Location (AJ507799) of EBV Encode RNA Not Matching to Known miRNA.
RNA Fragment | Sequence (5′–3′) | Length | C666-1 | X2117 | Position | |
Group 1 | miR-BART21 | CACUAGUGAAGGCAACUAAC | 20 | 1 | 0 | 145515:145534 |
Group 2 | miR-BART22 | UUACAAAGUCAUGGUCUAGUA(GU)* | 21–23 | 14 | 1 | 147203:147215 |
Group 3 | EBER1–5′ | (A)AGGACCUACGCUGCCCU(A) | 17–19 | 8 | 0 | 6629:6646 |
EBER1 | GACUCUGCUUUCUGCCGU | 18 | 1 | 0 | 6742:6759 | |
EBER1 | GGGAGGUUCUCUCGGGGCCACGCC | 24 | 1 | 0 | 6659:6676 | |
EBER1 3′ | (UACC)AGCUGGUGGUCCGCAUGUUU | 20–24 | 5 | 1 | 6772:6794 | |
EBER2 | UAGUGGUUUCGGACACAC | 18 | 1 | 0 | 6972:6989 | |
EBER2 | GAGAAGGGUAUUCGGCUUGU | 20 | 2 | 0 | 7098:7117 | |
EBER2 | AGGACAGCCGUUGCCCUAGUGGUUU | 25 | 0 | 1 | 6956:6980 |
Sequence variations of the cloned fragments are indicated by parentheses.
Of 15 sequences, 2 had two nucleotides shorter.