Table 1. The summary of K-means clustering results for 2RH5A, 2RH5B, 2RH5C and 2RGXA from hyperthermophilic E. coli.
Cluster ID | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|
2RH5A | PI range | 1-12 | 13-24 | 25-35 | 36-45 | 46-54 | 55-63 | 64-71 | 72-80 | 81-90 | 91-99 | |
Kmeans centers | RMSD | 1.73 | 1.86 | 2.24 | 2.67 | 2.60 | 3.09 | 3.21 | 2.81 | 3.27 | 2.95 | |
PI | 6.5 | 18.5 | 30 | 40.5 | 50 | 59 | 67.5 | 76 | 85.5 | 95 | ||
2RH5B | PI range | 1-12 | 13-24 | 25-36 | 37-47 | 48-57 | 58-66 | 67-75 | 76-84 | 85-92 | 93-99 | |
Kmeans centers | RMSD | 1.77 | 1.74 | 1.98 | 2.36 | 2.32 | 2.61 | 2.75 | 3.13 | 3.25 | 2.36 | |
PI | 6.5 | 18.5 | 30.5 | 42 | 52.5 | 62 | 71 | 80 | 92 | 99 | ||
2RH5C | PI range | 1-10 | 11-21 | 22-32 | 33-42 | 43-52 | 53-61 | 62-70 | 71-79 | 80-89 | 90-99 | |
Kmeans Centers | RMSD | 1.97 | 1.99 | 1.91 | 2.19 | 2.52 | 2.75 | 2.66 | 2.81 | 3.05 | 3.01 | |
PI | 5.5 | 16 | 27 | 37.5 | 47.5 | 57 | 66 | 75 | 85 | 95 | ||
2RGXA | PI range | 1-9 | 10-18 | 19-28 | 29-38 | 39-48 | 49-57 | 58-67 | 68-77 | 78-88 | 89-99 | |
Kmeans centers | RMSD | 3.02 | 2.66 | 2.82 | 2.88 | 3.04 | 2.58 | 2.50 | 2.08 | 1.72 | 1.64 | |
PI | 5 | 14 | 23.5 | 33.5 | 43.5 | 53 | 62.5 | 72.5 | 83 | 94 |