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. Author manuscript; available in PMC: 2010 Nov 15.
Published in final edited form as: Proteins. 2009 Nov 15;77(3):551–558. doi: 10.1002/prot.22467

Table 1. The summary of K-means clustering results for 2RH5A, 2RH5B, 2RH5C and 2RGXA from hyperthermophilic E. coli.

The columns having lowest CE RMSD of K-means centers are show in bold representing the PI ranges closest to the corresponding PDB structures. PI: pathway index; RMSD: RMSD (in Å) reported by CE program.

Cluster ID 1 2 3 4 5 6 7 8 9 10
2RH5A PI range 1-12 13-24 25-35 36-45 46-54 55-63 64-71 72-80 81-90 91-99
Kmeans centers RMSD 1.73 1.86 2.24 2.67 2.60 3.09 3.21 2.81 3.27 2.95
PI 6.5 18.5 30 40.5 50 59 67.5 76 85.5 95
2RH5B PI range 1-12 13-24 25-36 37-47 48-57 58-66 67-75 76-84 85-92 93-99
Kmeans centers RMSD 1.77 1.74 1.98 2.36 2.32 2.61 2.75 3.13 3.25 2.36
PI 6.5 18.5 30.5 42 52.5 62 71 80 92 99
2RH5C PI range 1-10 11-21 22-32 33-42 43-52 53-61 62-70 71-79 80-89 90-99
Kmeans Centers RMSD 1.97 1.99 1.91 2.19 2.52 2.75 2.66 2.81 3.05 3.01
PI 5.5 16 27 37.5 47.5 57 66 75 85 95
2RGXA PI range 1-9 10-18 19-28 29-38 39-48 49-57 58-67 68-77 78-88 89-99
Kmeans centers RMSD 3.02 2.66 2.82 2.88 3.04 2.58 2.50 2.08 1.72 1.64
PI 5 14 23.5 33.5 43.5 53 62.5 72.5 83 94