Table 4. Detailed assessment of dCt cut-off values for mutation calling with the KRAS-TMGB test. Mutant FFPE-DNA samples* were diluted 1∶10 and 1∶100 in wild-type samples. Correspondingly, final concentrations of 7% and 0.7% tumor cells were anticipated.
dCt, undiluted | dCt, 1∶10 | dCt, 1∶100 | ||||||
assay | mean | SD | mean | SD | calculated cut-offˆ | cut-off for use | mean | SD |
12ALA | −0,0992 | 0,2284 | 0,3386 | 0,2203 | 0,9997 | <2 | 1,2900 | 0,1531 |
12ARG | −1,9221 | 0,0211 | −0,1348 | 0,1863 | 0,4240 | <2 | 1,4814 | 0,1318 |
12ASP | −0,3009 | 0,1802 | 3,4264 | 0,1093 | 3,7543 | 4 | 7,6930 | 0,3609 |
12CYS | 0,7338 | 0,1737 | 3,5420 | 0,0616 | 3,7269 | 4 | 5,4607 | 0,1741 |
12SER | −0,1940 | 0,1407 | 4,3250 | 0,1537 | 4,7862 | 5 | 6,3535 | 0,4833 |
12VAL | 0,4837 | 0,1256 | 4,3814 | 0,1881 | 4,9458 | 5 | 6,6008 | 0,9939 |
13ASP | −0,6969 | 0,0817 | 2,4194 | 0,1543 | 2,8823 | 3 | 4,2344 | 0,3250 |
* = mutant samples, sequencing validated, containing approximately 70% tumor cells.
ˆ = mean + 3X SD.