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. 2009 Nov 4;4(11):e7746. doi: 10.1371/journal.pone.0007746

Table 4. Detailed assessment of dCt cut-off values for mutation calling with the KRAS-TMGB test. Mutant FFPE-DNA samples* were diluted 1∶10 and 1∶100 in wild-type samples. Correspondingly, final concentrations of 7% and 0.7% tumor cells were anticipated.

dCt, undiluted dCt, 1∶10 dCt, 1∶100
assay mean SD mean SD calculated cut-offˆ cut-off for use mean SD
12ALA −0,0992 0,2284 0,3386 0,2203 0,9997 <2 1,2900 0,1531
12ARG −1,9221 0,0211 −0,1348 0,1863 0,4240 <2 1,4814 0,1318
12ASP −0,3009 0,1802 3,4264 0,1093 3,7543 4 7,6930 0,3609
12CYS 0,7338 0,1737 3,5420 0,0616 3,7269 4 5,4607 0,1741
12SER −0,1940 0,1407 4,3250 0,1537 4,7862 5 6,3535 0,4833
12VAL 0,4837 0,1256 4,3814 0,1881 4,9458 5 6,6008 0,9939
13ASP −0,6969 0,0817 2,4194 0,1543 2,8823 3 4,2344 0,3250

* =  mutant samples, sequencing validated, containing approximately 70% tumor cells.

ˆ  =  mean + 3X SD.