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. Author manuscript; available in PMC: 2009 Oct 28.
Published in final edited form as: Nat Struct Mol Biol. 2009 Mar 22;16(4):359–364. doi: 10.1038/nsmb.1581

Table 1.

Thermodynamic and kinetic parameters for different tRNAGGCAla on cognate and near-cognate codons

Kd (nM)a kGTPmax (s−1)b kpep (s−1)a
Codon A-U U-A A-U U-A A-U U-A C-G C-A
GGC 2.3 ± 0.40 1.0 ± 0.23 31 ± 13 27 ± 11 1.7 ± 0.21 1.8 ± 0.69 1.5 ± 0.70 1.4 ± 0.27
GCU 5.9 ± 0.93 1.3 ± 0.24 23 ± 3.3 25 ± 3.1 1.4 ± 0.17 1.4 ± 0.16 1.5 ± 0.36 1.8 ± 0.15
GCG ~1000c 175 ± 30
GCA ~1000c 210 ± 52 2.4 ± 0.23 26 ± 18 <0.05d 2.1 ± 0.34 <0.05 d 3.4 ± 0.64
GUC <0.05 d 1.4 ± 0.36 <0.05 d 1.6 ± 0.35
ACC <0.05 d 0.49 ± 0.16 <0.05 d 2.8 ± 0.79

Error values are the standard error of the mean value.

a

Values are the average of at least three independent experiments.

b

Values were determined based on curves fit to at least four apparent kGTP values determined at different ribosome concentrations.

c

Estimated value since precise Kd determination exceeded the limits of accurate measurement.

d

Estimated limit (see Methods).