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Comparison of the performances of MOPHY and other methods in reconstructing the phylogenetic tree of seven PPI networks. (a) Tree based on genome sequences [36], (b) tree reconstructed by MOPHY, (c) tree reconstructed by RDL [16], (d) tree reconstucted by using protein similarities only, (e) tree reconstructed by using random group of proteins as modules, (f) tree reconstructed by Random Homolog Selection method.
