Table 1.
DNA motifs discovered in the promoters of plant seed-storage protein genes
| Plant family | Motif ID | q-value | PLACE ID | STAMP alignment | E value |
| Brassicaceae | B1 | 1.60e-07 | RYREPEATBNNAPA |
MKCCATGCAAAN ---CATGCA--- |
5.02-08 |
| B2 | 5.45e-04 | GADOWNAT |
AYKTGTCACYCY ACGTGTC----- |
6.86e-08 | |
| B3 | 1.84e-02 | RYREPEATBNNAPA |
NYWCATGCANNY ---CATGCA--- |
9.68e-08 | |
| Fabaceae | F1 | 1.43e-07 | LEGUMINBOXLEGA5 |
NNRCCATGCATR TAGCCATGCAWR |
4.73e-12 |
| F2 | 2.06-03 | RYREPEATLEGUMINBOX |
RNNCATGCANNN ---CATGCAY-- |
1.05e-09 | |
| F3 | 7.24e-03 | TATABOX1 |
TMNCTATAAATA ---CTATAAATA |
1.58e-12 | |
| F4 | 9.05e-03 | E2FBNTRNR |
KAMGCGGCNAMN ---GCGGCAAA- |
9.03e-05 | |
| F5 | 4.53e-02 | ACGTSEED2 |
NSACWCNTCMWY ACACACGTCAA- |
1.32e-08 | |
| Poaceae | P1 | 6.84e-08 | GLMHVCHORD |
KRTGAGTCATNN -RTGASTCAT-- |
1.52e-13 |
| P2 | 2.17e-05 | PROLAMINBOXOSGLUB1 |
ANNTTGCAAAMN ----TGCAAAG- |
4.41e-06 | |
| P3 | 1.85e-04 | EMHVCHORD |
NYRTAAAGTNNW -TGTAAAGT--- |
6.45e-11 | |
| P4 | 2.94e-03 | TATABOX1 |
NANCTATAAAWR ---CTATAAATA |
6.12e-10 | |
| P5 | 9.17e-03 | BIHD1OS |
KNTTGTCATNTW ---TGTCA---- |
6.65e-06 | |
| P6 | 1.14e-02 | GCAACREPEATZMZEIN |
NMWAAAGCAANN -GCAACGCAAC- |
5.47e-03 | |
| P7 | 2.82e-02 | O2F3BE2S1 |
WNNACATRCWWR TCCACGTACT-- |
1.55e-05 |
q-value, statistical significance of motif
PLACE ID, identifier of PLACE consensus sequence matching motif
STAMP alignment, alignment of motif consensus sequence (top) with PLACE consensus sequence (bottom)
E value, expectation value of the STAMP alignment