Table 2.
Top-ten scoring soybean promoters for the presence of Fabaceae seed-storage protein gene promoter motifs
Gene ID | PWM rank | Hit id | Hit description | E value |
Glyma03 g32030.1 | 1 | P04776 | Glycinin Gy1 | 0.0 |
Glyma19 g34780.1 | 2 | P11828 | Glycinin Gy3 | 0.0 |
Glyma20 g28650.2 | 3 | P13916 | β-conglycinin, alpha chain | 0.0 |
Glyma03 g32020.2 | 4 | P04405 | Glycinin Gy2 | 2.0e-251 |
Glyma10 g04280.1 | 5 | P02858 | Glycinin Gy4 | 0.0 |
Glyma13 g18450.1 | 6 | P04347 | Glycinin Gy5 | 3.0e-285 |
Glyma10 g39150.1 | 7 | P11827 | Beta-conglycinin, alpha' chain | 3.0e-105 |
Glyma20 g28640.1 | 8 | P25974 | β-conglycinin, beta chain | 7.0e-298 |
Glyma20 g28460.2 | 9 | P25974 | β-conglycinin, beta chain | 1.0e-269 |
Glyma03 g39940.1 | 10 | P13917 | Basic 7S globulin 1 | 7.0e-302 |
Gene ID, gene identifier (soybean genome assembly and annotation Glyma1)
PWM rank, total PWM matching score rank
C-B rank, total Cluster-Buster score rank
Hit ID, hit identifier (Uniprot/Swiss-Prot)
Description, hit description
E value, hit alignment expectation value.