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. Author manuscript; available in PMC: 2010 Oct 23.
Published in final edited form as: J Mol Biol. 2009 Aug 14;393(2):435–447. doi: 10.1016/j.jmb.2009.08.021

Table 1. Crystallographic statistics.

Data
PDB accession code 3H53 3H54 3H55 3IGU
Ligand soak None GalNAc Gal F2-α-Gal-TNP
X-ray source Rotating anode Rotating anode BNL X6A BNL X6A
Wavelength, Å 1.54 1.54 0.979 0.980
Space Group C2 C2 C2 C2
Cell a, b, c in Å 153.5, 114.3, 68.4 153.4, 114.2, 68.3 153.9, 114.5, 68.4 151.6, 113.6, 68.4
Cell α, β, γ in ° 90., 96.1, 90. 90., 95.6, 90. 90., 96.2, 90. 90., 96.1, 90.
Resolution, Å (last shell) 50-2.01 (2.08-2.01) 50-2.2 (2.28-2.2) 50-1.9 (1.97-1.9) 50-2.15 (2.23-2.15)
No. of Observations (last shell) 772,346 (60,051) 356,155 (24,762) 319,671 (32,173) 265,173 (21,625)
Unique Observations (last shell) 77,785 (7,283) 59,205 (5,733) 87,369 (8,937) 62,455 (6,056)
Completeness, % (last shell) 99.3 (93.0) 99.1 (95.9) 95.8 (98.2) 99.7 (97.4)
Multiplicity (last shell) 9.9 (8.2) 6.0 (4.2) 3.7 (3.6) 4.2 (3.5)
Rsym (last shell) 0.085 (0.610) 0.106 (0.674) 0.117 (0.698) 0.078 (0.634)
<I/σI> (last shell) 29.0 (3.2) 15.9 (2.0) 10.1 (1.7) 17.6 (1.8)
Refinement
Rwork / Rfree 0.161/0.194 0.165/0.205 0.196/0.235 0.164/0.199
No. of Atoms: Protein 6192 6192 6192 6192
      Carbohydrate 237 267 285 240
      Water 735 655 898 675
      Other 102 90 26 90
Average B factor, Å2: Protein 26.0 33.3 20.8 26.0
         Ligand 43.8 37.0 21.7 40.1
Ramachandran: Favored 90.8% 90.1% 89.6% 89.9%
      Allowed 8.4% 9.2% 9.5% 9.5%
      Generous 0.5% 0.5% 0.6% 0.3%
      Forbidden 0.3% 0.3% 0.3% 0.3%
RMS Deviations: Bonds, Å 0.007 0.007 0.007 0.007
       Angles, ° 1.05 1.11 1.09 1.10

RsymhΣi|Ih,i-<Ih>|/ΣhΣi|Ih,i|, where Ih,i is the ith intensity measurement of reflection h and <Ih> is the average intensity of that reflection.

Rwork, Rfreeh|FP-FC|/Σh|FP|, where FC is the calculated and FP is the observed structure factor amplitude of reflection h for the working or free set, respectively.

Ramachandran statistics are calculated in PROCHECK.