TABLE 3.
LSP types and spoligotypes of 109 consecutive FQ-resistant isolates and 109 consecutive pulmonary control isolates from southern Vietnam
| LSP type | Spoligotype clade | Octal codea | No. of isolates |
OR (95% CI) | P value | |
|---|---|---|---|---|---|---|
| Control group | FQ resistant | |||||
| East Asian (Beijing) | 61 | 82 | 2.39 (1.34-4.25) | 0.003 | ||
| Beijing | 000000000003771 | 61 | 82 | |||
| Indo-Oceanic | 32 | 14 | 0.35 (0.17-7.11) | 0.004 | ||
| CAS1 | 703377400001771 | 1 | 0 | |||
| EA11-SOM | 077777777413731 | 1 | 0 | |||
| EA12-MANILA | 677777477413771 | 1 | 0 | |||
| EA14-VNM | 777777774413771 | 20 | 5 | |||
| EA15 | 777777777413771 | 4 | 3 | |||
| EA153 | 777777777413371 | 1 | 0 | |||
| LAM3 | 776177607760771 | 1 | 0 | |||
| MANU2 | 777777777763771 | 1 | 0 | |||
| ZERO | 777777000000011 | 2 | 1 | |||
| Unknown | NA | 0 | 5 | |||
| Euro-American | 14 | 13 | 0.92 (0.41-2.05) | 0.837 | ||
| H1 | 777777774020771 | 1 | 0 | |||
| H3 | 111111111100111 | 1 | 3 | |||
| H3T3 | 777737777720771 | 1 | 0 | |||
| S | 776377737760771 | 0 | 1 | |||
| T1 | 111111111110111 | 2 | 1 | |||
| T2 | 777737777760731 | 1 | 1 | |||
| U | 777777777777771 | 4 | 1 | |||
| X1 | 777776777760731 | 0 | 1 | |||
| LAM9 | 111111101110111 | 0 | 2 | |||
| Unknown | NA | 4 | 3 | |||
| Undetermined | 2 | 0 | ||||
| Unclassified | 774017777413771 | 2 | 0 | |||
| Total | 109 | 109 | ||||
a
For more on octal code, see reference 3a. NA, not applicable.