Table I.

List of genes belonging to cellular processes whose transcript levels were greater under PSII light

The fold changes are the log₂ ratios of transcript abundance in cells illuminated with PSII light versus PSI light at various time points. The complete list of genes with fold changes and respective P values is provided in Supplemental Table S2.

Open Reading Frame	Open Reading Frame Product	15 min	45 min	90 min	2 h	3 h	6 h
Heat shock proteins
sll0170	DnaK2	3.62	2.01	0.41	0.19	0.3	−0.55
sll0416	GroEL2	2.07	0.94	0.45	0.28	0.29	−0.07
sll0430	HtpG	3.94	0.95	0.32	0.05	−0.02	−0.48
sll0897	DnaJ	1.44	0.38	0.28	0.25	0.22	0.17
sll1514	HspA	2.11	1.87	1.03	0.7	0.36	−0.34
slr0093	DnaJ	3.34	0.19	0.01	−0.13	−0.28	−0.35
slr2075	GroES	0.97	2.68	1.88	1.27	1	0.32
slr2076	GroEL1	0.25	2.47	1.7	1.18	0.9	0.35
Glycolate cycle
sll1831	Glycolate oxidase subunit	1.42	0.88	0.71	0.78	0.51	0.08
Cytochrome oxidase
sll1899	Cytochrome c oxidase folding protein (CtaB)	0.09	0.12	0.21	0.35	0.51	0.82
slr1136	Cytochrome c oxidase subunit II (CtaC1)	−0.13	−0.14	0.29	0.39	0.63	1
slr1137	Cytochrome c oxidase subunit I (CtaD1)	−0.23	−0.04	0.17	0.32	0.35	0.71
slr1138	Cytochrome c oxidase subunit III (CtaE1)	−0.13	−0.03	0.14	0.24	0.4	0.5
sll1245	Cytochrome cM (CytM)	0.04	0.46	0.37	0.52	0.51	0.54
N assimilation
sll0108	Ammonium permease (Amt1)	1.31	1.14	1.43	1.69	1.61	1.86
sll0537	Ammonium permease (Amt3)	0.45	0.21	0.2	0.2	0.15	0.37
sll1017	Ammonium permease (Amt2)	1.52	0.5	0.72	0.73	0.48	0.8
sll0374	Urea transport system (UrtE)	−0.15	0.12	0.16	0.35	0.49	0.54
slr1200	Urea transport system permease	0.69	0.12	0.32	0.51	0.66	0.97
slr1201	Urea transport system permease	0.62	0.14	0.47	0.53	0.51	0.99
sll0420	Urease β-subunit (UreB)	−0.13	0.26	0.24	0.33	0.35	0.4
slr1219	Urease accessory protein E (UreE)	0.04	0.08	0.06	0.12	0.13	0.38
slr1899	Urease accessory protein F (UreF)	0.09	0.41	0.51	0.35	0.3	0.39
sll1883	Arg biosynthesis (ArgJ)	0.02	0.48	0.49	0.62	0.75	0.98
slr0288	Glu-ammonia ligase (GlnN)	1.11	0.37	0.24	0.39	0.46	0.93
slr0898	Ferredoxin-nitrite reductase (NirA)	0.74	−0.09	0.07	0.19	0.3	1.11
slr1756	Glu-ammonia ligase (GlnA)	−0.42	0.01	0.25	0.4	0.36	0.72
ssl0707	N regulatory protein P-II (GlnB)	0.32	−0.21	0.28	0.47	0.68	0.8
sll1423	Global N regulator (NtcA)	0.29	0.43	0.28	0.49	0.43	0.37
sll1102	Glu transport (GtrA)	0.44	0.24	0.13	0.36	0.45	0.51
Arg catabolism
sll0370	Carbamoyl phosphate synthase (PyrA)	0.11	−0.1	0.15	0.37	0.56	0.57
sll1077	Agmatinase (SpeB2)	0.18	0.15	0.41	0.66	0.94	1.06
sll1498	Carbamoyl phosphate synthase small chain	0.11	0.38	0.52	0.55	0.53	0.67
slr0585	Argininosuccinate synthetase (ArgG)	0.15	0.3	0.53	0.73	0.96	1.1
slr1022	N-Acetyl-Orn aminotransferase (ArgD)	−0.13	0.14	0.19	0.36	0.39	0.52
sll0422	Asparaginase	−0.14	−0.05	0.04	0.19	0.28	0.5