Table II.
List of genes belonging to cellular processes whose transcript levels were greater under PSI light
The fold changes are the log2 ratios of transcript abundance in cells illuminated with PSII light versus PSI light at various time points. The complete list of genes with fold changes and respective P values is provided in Supplemental Table S2.
| Open Reading Frame | Open Reading Frame Product | 15 min | 45 min | 90 min | 2 h | 3 h | 6 h |
|---|---|---|---|---|---|---|---|
| Energy metabolism | |||||||
| sll0018 | Fru-bisphosphate aldolase (CI-Fba) | −1.18 | −0.98 | −0.73 | −0.89 | −0.67 | −0.61 |
| sll1275 | Pyruvate kinase 2 (Pyk2) | 0.13 | −0.37 | −0.38 | −0.31 | −0.27 | −0.15 |
| slr0394 | Phosphoglycerate kinase (Pgk) | −0.09 | −0.65 | −0.17 | −0.16 | 0.2 | 0.43 |
| slr0884 | Glyceraldehyde 3-phosphate dehydrogenase (Gap1) | 0.08 | 0.18 | 0.24 | 0.46 | 0.74 | 1.17 |
| slr0943 | Fru-bisphosphate aldolase (CII-Fba) | −0.29 | −0.28 | −0.22 | −0.47 | −0.46 | −0.51 |
| sll0329 | 6-Phosphogluconate dehydrogenase (Gnd) | −0.53 | −0.27 | −0.04 | 0.05 | 0.25 | 0.65 |
| slr1843 | Glc-6-P dehydrogenase (Zwf) | −0.49 | −0.46 | −0.38 | −0.31 | −0.21 | 0.08 |
| slr0301 | Phosphoenolpyruvate synthase (Pps) | 0.43 | 0.54 | −0.57 | −1 | −0.83 | −1.34 |
| slr0194 | Ribose 5-phosphate isomerase (RpiA) | −0.74 | −0.81 | −0.6 | −0.69 | −0.55 | −0.26 |
| slr0942 | Alcohol dehydrogenase | −0.3 | −0.38 | −0.42 | −0.65 | −0.71 | −0.7 |
| sll0823 | Probable succinate dehydrogenase | −0.41 | −0.47 | −0.3 | −0.2 | 0.12 | 0.26 |
| sll0891 | Malate dehydrogenase | 0.07 | 0.33 | −0.16 | −0.42 | −0.56 | −0.96 |
| slr1233 | Succinate dehydrogenase | −0.41 | −0.09 | −0.3 | −0.35 | −0.57 | −0.5 |
| sll0771 | Glc transport protein (Gtr) | 0.14 | −0.67 | −0.65 | −0.41 | −0.37 | −0.79 |
| C fixation | |||||||
| sll0934 | Carboxysome formation protein (CcmA) | −0.48 | 0.39 | 0.11 | 0.12 | −0.03 | −0.13 |
| sll1028 | CO2-concentrating mechanism protein (CcmK) | −0.02 | −0.62 | −0.37 | −0.18 | 0.19 | 0.43 |
| sll1029 | CO2-concentrating mechanism protein (CcmK) | −0.13 | −0.62 | −0.32 | −0.08 | 0.28 | 0.68 |
| sll1030 | CO2-concentrating mechanism protein (CcmL) | −0.2 | −0.68 | −0.36 | −0.05 | 0.32 | 0.76 |
| sll1031 | CO2-concentrating mechanism protein (CcmM) | −0.58 | −0.7 | −0.42 | −0.18 | 0.18 | 0.67 |
| sll1032 | CO2-concentrating mechanism protein (CcmN) | −0.08 | −0.63 | −0.42 | −0.24 | −0.05 | 0.32 |
| sll1525 | Phosphoribulokinase (Prk) | −0.39 | −0.79 | −0.49 | −0.23 | −0.03 | −0.06 |
| slr0009 | Ribulose bisphosphate carboxylase (RbcL) | −0.83 | −1.04 | −0.75 | −0.64 | −0.29 | 0.49 |
| slr0012 | Ribulose bisphosphate carboxylase (RbcS) | −1.17 | −1.02 | −0.81 | −0.68 | −0.28 | 0.56 |
| Cytochrome b6f complex | |||||||
| sll1317 | Apocytochrome f (PetA) | −0.83 | −0.52 | −0.39 | −0.35 | −0.21 | −0.18 |
| slr0342 | Cytochrome b6 (PetB) | −1.23 | −0.83 | −0.66 | −0.92 | −0.87 | −0.8 |
| slr0343 | Cytochrome b6f complex (PetD) | −1.32 | −0.92 | −0.84 | −0.79 | −0.79 | −0.85 |
| sml0004 | Cytochrome b6f complex (PetN) | 0.07 | −0.74 | −0.42 | −0.02 | 0.19 | 0.11 |
| smr0003 | Cytochrome b6f complex (PetM) | −0.06 | −0.8 | −0.42 | −0.1 | 0.27 | 0.02 |
| N assimilation | |||||||
| sll1450 | Nitrate/nitrite transport system (NrtA) | −0.05 | −0.17 | −0.16 | −0.19 | −0.24 | 0.6 |
| sll1452 | Nitrate/nitrite transport system (NrtC) | −0.73 | −0.24 | −0.21 | −0.21 | −0.31 | 0.21 |
| sll1453 | Nitrate/nitrite transport system (NrtD) | −0.66 | −0.03 | −0.03 | −0.07 | −0.2 | 0 |
| sll1454 | Ferredoxin-nitrate reductase (NarB) | −0.57 | 0.04 | 0.02 | 0.04 | −0.06 | 0.27 |
| sll1499 | Glu synthase (GlsF) | −0.55 | −0.74 | −0.57 | −0.58 | −0.48 | −0.25 |
| slr0710 | Glu dehydrogenase (GdhA) | 0.19 | −0.32 | −0.44 | −0.44 | −0.44 | −0.44 |
| ssl1911 | Gln synthetase-inactivating factor (IF7) | −1.36 | −1.11 | −1.65 | −2.08 | −2.21 | −2.11 |
| sll1515 | Gln synthetase-inactivating factor (IF17) | −0.24 | 0.04 | −0.35 | −0.71 | −0.91 | −1.4 |
| Heat shock proteins | |||||||
| sll0058 | DnaK1 | −0.41 | −0.3 | −0.19 | −0.14 | −0.15 | −0.12 |
| sll1384 |
Similar to DnaJ protein |
−0.64 |
−0.52 |
−0.63 |
−0.89 |
−0.94 |
−1.01 |