Table III.

List of genes belonging to cellular processes whose transcript levels were greater under both PSII and PSI light

The fold changes are the log₂ ratios of transcript abundance in cells illuminated with PSII light versus PSI light at various time points. The complete list of genes with fold changes and respective P values is provided in Supplemental Table S2.

Open Reading Frame	Open Reading Frame Product	15 min	45 min	90 min	2 h	3 h	6 h
Pigment biosynthesis
slr0056	Chl a synthase	0.11	0.33	0.28	0.43	0.58	0.46
sll1875	Heme oxygenase (HO2)	0.21	0.49	0.57	0.87	0.97	0.36
slr1030	Magnesium protoporphyrin IX chelatase	0.05	0.29	0.27	0.39	0.44	0.21
sll1184	Heme oxygenase (HO1)	−0.65	−0.65	−0.38	−0.18	0	−0.18
sll1185	Coproporphyrinogen III oxidase	−0.29	−0.07	0.06	0.4	0.52	0.53
sll1994	Porphobilinogen synthase	−0.31	−0.53	−0.42	−0.24	−0.27	−0.38
slr0260	Cob(I)alamin adenosyltransferase	0.46	−0.35	−0.34	−0.18	−0.07	−0.21
slr0749	Light-independent protochlorophyllide reductase (ChlL)	−0.6	−0.63	−0.59	−0.64	−0.48	−0.62
slr0772	Light-independent protochlorophyllide reductase (ChlB)	−1.05	−0.75	−0.74	−0.77	−0.78	−1
Cellular protection
slr1738	Transcription regulator (PerR)	1.26	0.56	0.54	0.64	0.55	0.42
sll1621	AhpC/TSA family protein (PrxII)	0.28	0.47	0.64	0.69	0.63	0
ssr2061	Glutaredoxin	0.13	0.39	0.52	0.7	0.85	0.92
sll1159	Probable bacterioferritin comigratory protein	−0.02	0.26	0.73	0.97	1.18	1.18
slr1238	Glutathione synthetase	−0.2	0.26	0.43	0.49	0.64	0.87
slr0233	Thioredoxin M (TrxM)	−0.12	−0.14	−0.3	−0.3	−0.41	−0.63
slr0600	NADP-thioredoxin reductase (NTR)	0.24	0.06	−0.11	−0.3	−0.5	−0.76
ssr1789	CAB/ELIP/HLIP-related protein (HliD)	0.04	−0.2	−0.27	−0.33	−0.39	−0.43
ssr2595	High-light-inducible polypeptide (HliB)	−1.25	−0.64	−0.67	−0.54	−0.66	−0.02
Phycobilisome
sll1577	Phycocyanin β-subunit (CpcB)	−0.15	−0.22	0.59	0.65	0.61	0.63
sll1578	Phycocyanin α-subunit (CpcA)	−0.1	−0.2	0.5	0.5	0.54	0.55
sll1579	Phycobilisome rod linker polypeptide (CpcC2)	0.18	−0.18	0.38	0.38	0.43	0.21
sll1580	Phycobilisome rod linker polypeptide (CpcC1)	0.12	−0.19	0.47	0.57	0.63	0.31
ssl0452	Phycobilisome degradation protein (NblA1)	−0.18	0.64	0.48	0.26	0.24	0.31
ssl0453	Phycobilisome degradation protein (NblA2)	−0.39	0.48	0.33	0.05	0.07	0.33
sll0928	Allophycocyanin B (ApcD)	−0.49	−0.32	−0.08	0.04	0.07	−0.01
slr0335	Phycobilisome core membrane linker (ApcE)	−0.61	−0.74	−0.29	−0.21	−0.05	−0.16
slr1459	Phycobilisome core component (ApcF)	−0.88	−0.73	−0.38	−0.33	−0.18	−0.34
slr1986	Allophycocyanin β-subunit (ApcB)	−1.11	−0.65	−0.23	−0.14	0.12	0.09
slr2051	Phycobilisome rod-core linker (CpcG1)	−0.45	−0.39	−0.09	−0.09	0.09	−0.07
slr2067	Allophycocyanin α-subunit (ApcA)	−0.75	−0.61	−0.17	−0.1	0.15	0.11
ssr3383	Phycobilisome small core linker (ApcC)	−1.28	−0.94	−0.35	0.43	0.58	0.34
Protein degradation
sll0020	Clp protease ATPase	0.14	0.52	0.4	0.18	−0.07	−0.37
sll1679	Periplasmic protease (HhoA)	0.49	0.38	0.31	0.33	0.18	−0.09
sll2008	Processing protease	0.28	0.61	0.81	0.97	0.92	1.29
sll2009	Processing protease	0.2	0.55	0.83	0.87	0.82	0.95
slr1204	Protease (HtrA)	1.43	0.44	0.29	0.11	0.15	0.53
slr1641	ClpB protein (ClpB1)	3.31	0.45	−0.01	−0.32	−0.43	−0.63
slr0008	C-terminal processing protease (CtpA)	2.06	−0.05	−0.15	−0.14	−0.17	−0.18
slr0164	ATP-dependent Clp protease (ClpP4)	−0.57	−0.06	−0.1	−0.38	−0.45	−0.37
slr0165	ATP-dependent Clp protease (ClpP3)	−0.59	−0.11	−0.12	−0.33	−0.45	−0.43
slr1751	Periplasmic C-terminal protease	−0.54	−0.05	−0.25	−0.33	−0.59	−0.58