Table I.
TF genes significantly expressed in nodules of P-deficient plants identified by real-time RT-PCR
| GenBank Accession No. (TC No.) | Annotation | BLASTX E Value | TF Family/Domain | Expression Ratio –P/+P | P |
|---|---|---|---|---|---|
| Induced in –P | |||||
| CV531158 | O23379 Putative zinc finger protein CONSTANS-LIKE 11 | 1.00 E-8 | C2C2(Zn) | 5.55 | 0.00130 |
| CB542189 | Q96502 Zinc finger protein CONSTANS-LIKE 2 | 1.00 E-8 | C2C2(Zn) | 2.71 | 0.04174 |
| TC3558 | Q96288 Salt tolerance protein | 1.00 E-76 | C2C2(Zn) | 2.33 | 0.00672 |
| CB540841 | Q9SSE5 Zinc finger protein CONSTANS-LIKE 9 | 3.00 E-7 | C2C2(Zn) | 2.23 | 0.01626 |
| BQ481766 (TC4839)a | Q96502 Zinc finger protein CONSTANS-LIKE 2 | 1.00 E-9 | C2C2(Zn) | 2.00 | 0.00360 |
| TC3525 | Q42430 Zinc finger protein 1 (WZF1) | 2.00 E-13 | C2H2(Zn) | 3.37 | 0.00122 |
| CB541538 | B9IEY1 Predicted protein | 6.00 E-40 | C2H2(Zn) | 3.31 | 0.01795 |
| TC4594 | Q42430 Zinc finger protein 1 (WZF1) | 4.00 E-149 | C2H2(Zn) | 2.57 | 0.03902 |
| CV542423 | Q39266 Zinc finger protein 7 | 4.00 E-07 | C2H2(Zn) | 2.25 | 0.01362 |
| TC6164 | Q8L6Y4 Polycomb group protein EMBRYONIC FLOWER 2 | 1.00 E-149 | C2H2(Zn) | 2.06 | 0.01031 |
| CV533267 | Q9FJ93 Dehydration-responsive element-binding protein 1D | 2.00 E-41 | AP2/EREBP | 4.70 | 0.01197 |
| BQ481785 | Q84QC2 Ethylene-responsive transcription factor ERF017 | 3.00 E-34 | AP2/EREBP | 2.71 | 0.05405 |
| CB540147 (TC6825)a | Q8LC30 Ethylene-responsive transcription factor RAP2-1 | 2.00 E-39 | AP2/EREBP | 2.55 | 0.05779 |
| TC6676 | O80337 Ethylene-responsive transcription factor 1A | 3.00 E-63 | AP2/EREBP | 2.15 | 0.02622 |
| TC3112 | Q9SAH7 Probable WRKY transcription factor 40 | 4.00 E-74 | WRKY(Zn) | 2.76 | 0.01113 |
| CX129652 | Q8S8P5 Probable WRKY transcription factor 33 | 3.00 E-52 | WRKY(Zn) | 2.50 | 0.03801 |
| TC3738 | Q9SUP6 Probable WRKY transcription factor 53 | 3.00 E-57 | WRKY(Zn) | 2.02 | 0.04625 |
| TC4946 | Q9LX82 Transcription factor MYB48 | 6.00 E-25 | MYB superfamily | 2.36 | 0.01668 |
| TC2999 | Q6ZNW5 UPF0580 protein C15orf58 | 6.00 E-40 | MYB superfamily | 2.32 | 0.01079 |
| DN153793 | Q9M2Y9 Transcription factor RAX3 | 1.00 E-20 | MYB superfamily | 2.04 | 0.05997 |
| CV536452 | Q9FIW5 Putative NAC domain-containing protein 94 | 8.00 E-27 | NAC | 2.34 | 0.03376 |
| CV534675 | Q5CD17 NAC domain-containing protein 77 | 3.00 E-30 | NAC | 2.26 | 0.03562 |
| CV530141 | B9RH27 Transcription factor, putative | 4.00 E-11 | NAC | 2.04 | 0.02866 |
| TC7761 | Q9LMA8 Protein TIFY 10A | 1.00 E-30 | ZIM/TIFY | 3.40 | 0.01489 |
| TC5396 | Q9LMA8 Protein TIFY 10A | 1.00 E-39 | ZIM/TIFY | 2.48 | 0.00604 |
| TC7287 | Q9FXG8 BEL1-like homeodomain protein 10 | 9.00 E-48 | Homeobox | 2.69 | 0.04828 |
| TC3707 | Q6YWR4 Homeobox-Leu zipper protein HOX16 | 4.00 E-24 | Homeobox | 2.18 | 0.00083 |
| CV538920 | P24068 Ocs element-binding factor 1 | 7.00 E-21 | bZIP | 2.27 | 0.00289 |
| TC3839 | Q69IL4 Transcription factor RF2a | 3.00 E-39 | bZIP | 2.21 | 0.02188 |
| BQ481439 | Q0PJI4 MYB transcription factor MYB138 | 1.00 E-52 | Homeodomain-like | 6.83 | 0.04473 |
| CV536165 | Q9SMX9 Squamosa promoter-binding-like protein 1 | 1.00 E-54 | SBP | 4.38 | 0.00422 |
| TC6556 | P13089 Auxin-induced protein AUX28 | 2.00 E-99 | AUX/IAA | 3.37 | 0.00049 |
| TC6822 | Q8VY21 Tubby-like F-box protein 3 | 1.00 E-153 | TUB | 2.86 | 0.03833 |
| TC5176 | Q69VG1 Chitin-inducible gibberellin-responsive protein 1 | 1.00 E-153 | GRAS | 2.58 | 0.02628 |
| CV529418 | O49403 Heat stress transcription factor A-4a | 2.00 E-27 | HSF | 2.13 | 0.01078 |
| CV529563 (TC3533)a | Q9CAA4 Transcription factor BIM2 | 8.00 E-50 | bHLH | 2.00 | 0.03141 |
| Repressed in –P | |||||
| CV530991 |
Q0D3J9 C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53 |
2.00 E-12 |
C3H-type 1(Zn) |
−2.56 |
0.00581 |
a
Previous singletons (in PhvGI version 1.0) now correspond to the indicated TC according to PhvGI version 2.0.