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. Author manuscript; available in PMC: 2010 Sep 30.
Published in final edited form as: J Am Chem Soc. 2009 Sep 30;131(38):13709–13721. doi: 10.1021/ja9039373

Figure 6.

Figure 6

Correlation for 31 compounds between the experimental Ki values and (A) van der Waals interaction, (B) binding free energy, (C) binding free energy with ligand reorganization free energy upon binding based on the MM-GBSA method. Here, ΔG is the calculated binding free energy based on the protein-ligand complex conformations.