Table II.
Proteins identified in the exoprotein fraction of A. pernix K1
| Protein name | Accession number | ORF | Molecular mass | Unique peptides | Unique spectra | Total spectra | Sequence coverage |
|---|---|---|---|---|---|---|---|
| Da | % | ||||||
| Oligopeptide ABC transporter, oligopeptide-binding protein | gi|118431519 | APE_1583.1 | 101,753.3 | 67 | 85 | 1,559 | 67 |
| 5′-Methylthioadenosine phosphorylase II | gi|14601697 | APE_1885 | 30,718.8 | 20 | 20 | 42 | 70 |
| Hypothetical protein APE_1457 | gi|14601419 | APE_1457 | 19,640.5 | 3 | 3 | 3 | 18 |
| Hypothetical protein APE_1117 | gi|14601190 | APE_1117 | 25,867.9 | 26 | 28 | 164 | 94 |
| Acylamino acid-releasing enzyme | gi|118431816 | APE_2290.1 | 70,202.4 | 34 | 36 | 59 | 62 |
| Hypothetical protein APE_0061.1 | gi|118430860 | APE_0061.1 | 47,933.7 | 17 | 19 | 55 | 47 |
| Δ1-Pyrroline-5-carboxylate dehydrogenase | gi|118431207 | APE_0807.1 | 61,654.6 | 10 | 10 | 10 | 28 |
| ABC transporter, substrate-binding protein | gi|118430849 | APE_0035.1 | 52,225.7 | 7 | 7 | 29 | 18 |
| ABC transporter, substrate-binding protein precursor | gi|118430987 | APE_0304.1 | 90,222.4 | 7 | 7 | 17 | 10 |
| Nitrate reductase, β subunit | gi|118431399 | APE_1294.1 | 53,617.9 | 16 | 16 | 39 | 33 |
| Nitrate reductase, α subunit | gi|118431398 | APE_1288.1 | 145,341.7 | 36 | 36 | 96 | 32 |
| Thiosulfate sulfurtransferase | gi|118431935 | APE_2595.1 | 33,219.3 | 6 | 6 | 8 | 19 |
| Membrane lipoprotein family protein | gi|118431933 | APE_2592.1 | 48,132.8 | 11 | 11 | 15 | 29 |
| ABC transporter, substrate-binding protein precursor | gi|118431437 | APE_1390.1 | 83,897.1 | 32 | 35 | 212 | 54 |
| Aldehyde dehydrogenase, large subunit | gi|118431783 | APE_2216.1 | 85,738.9 | 26 | 27 | 48 | 41 |
| Hypothetical protein APE_0558.1 | gi|118431107 | APE_0558.1 | 45,254.5 | 3 | 3 | 3 | 12 |
| Dipeptide ABC transporter, dipeptide-binding protein DppA | gi|14601949 | APE_2257 | 57,903.5 | 17 | 18 | 49 | 31 |
| Aspartate aminotransferase | gi|14602053 | APE_2423 | 41,244.7 | 6 | 6 | 6 | 17 |
| ABC transporter, substrate-binding protein | gi|14601589 | APE_1728 | 56,773.1 | 13 | 13 | 50 | 22 |
| Hypothetical protein APE_0338.1 | gi|118431004 | APE_0338.1 | 49,550.3 | 32 | 32 | 53 | 58 |
| Surface layer protein | gi|118431124 | APE_0609.1 | 164,494.4 | 34 | 37 | 83 | 22 |
| ABC transporter, substrate-binding protein | gi|118431402 | APE_1303.1 | 46,381.4 | 4 | 4 | 14 | 14 |
| Leucine aminopeptidase | gi|118431875 | APE_2450.1 | 52,370.8 | 17 | 17 | 35 | 41 |
| Protease I | gi|14600627 | APE_0319 | 20,028.3 | 24 | 30 | 254 | 88 |
| Aldehyde dehydrogenase, large subunit | gi|118431161 | APE_0708.1 | 83,856.3 | 34 | 35 | 67 | 50 |
| Branched chain amino acid ABC transporter, branched chain amino acid-binding protein | gi|14601070 | APE_0917 | 53,601.3 | 27 | 30 | 231 | 52 |
| Surface layer-associated protease precursor | gi|14600834 | APE_0607 | 142,047.9 | 30 | 30 | 32 | 29 |
| Phosphate ABC transporter, phosphate-binding protein | gi|14600404 | APE_0045 | 40,287.3 | 7 | 7 | 11 | 27 |
| Pernisine | gi|118430960 | APE_0263.1 | 43,695.7 | 3 | 3 | 5 | 10 |
| Molybdopterin oxidoreductase, molybdopterin binding subunit | gi|14602175 | APE_2610 | 131,525.6 | 3 | 3 | 4 | 3 |
| Aldehyde dehydrogenase, small subunit | gi|14601917 | APE_2213 | 17,845.2 | 5 | 5 | 13 | 37 |
| Hypothetical protein APE_0858 | gi|14601024 | APE_0858 | 59,001.4 | 9 | 9 | 9 | 28 |
| Hypothetical protein APE_1952.1 | gi|118431658 | APE_1952.1 | 51,685.3 | 12 | 12 | 20 | 23 |
| Probable ABC transporter, substrate-binding protein | gi|118431798 | APE_2254.1 | 64,664.7 | 38 | 44 | 276 | 62 |
| Hypothetical protein APE_0966.1 | gi|118431277 | APE_0966.1 | 78,471.3 | 11 | 11 | 20 | 17 |
| Putative hydrolase | gi|118431842 | APE_2350.1 | 23,362.6 | 12 | 12 | 13 | 70 |
| Branched chain amino acid ABC transporter, branched chain amino acid-binding protein | gi|118431910 | APE_2521.1 | 47,195.2 | 9 | 9 | 10 | 20 |
| TRAP transporter, solute-binding component | gi|118431744 | APE_2136.1 | 35,017.4 | 22 | 26 | 49 | 59 |
| Aldehyde dehydrogenase, middle subunit | gi|14601920 | APE_2219 | 31,568.7 | 27 | 29 | 53 | 74 |
| Hypothetical protein APE_2446 | gi|14602070 | APE_2446 | 39,002.9 | 5 | 5 | 5 | 15 |