Table 1.
Conditions affecting esx-3 transcription
Treatment* | Transcription change direction | Nominal P value | False discovery rate q value† |
---|---|---|---|
111895 | Up | 0 | 0.00 |
Dipyridyl | Up | 0 | 0.00 |
Deferoxamine | Up | 0 | 0.04 |
Clofazimine | Up | 0 | 0.04 |
Ascididemin | Up | 0 | 0.03 |
Gene set enrichment analysis was performed as described in ref. 26. Expression changes with a nominal P value <0.05 and a false discovery rate q value <0.05 were considered significant.
*Treatments from ref. 27: 111895, dipyridyl, deferoxamine, and ascididemin are known chelators. Clofazimine is an antituberculosis drug with an unknown mechanism of action.
†False discovery rate q value is the fraction of observations expected to be false positives.