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. Author manuscript; available in PMC: 2010 Jan 1.
Published in final edited form as: Curr Opin Allergy Clin Immunol. 2009 Dec;9(6):517–524. doi: 10.1097/ACI.0b013e3283328f59

Table 1.

Online informatics tools and useful databases

ConSeq Sequence conservation http://conseq.tau.ac.il/
PolyPhen Deleterious effects http://coot.embl.de/PolyPhen/
SIFT Deleterious effects http://sift.jcvi.org/
OMIM Database of human genetic disorders http://www.ncbi.nlm.nih.gov/omim/
dbSNP Identified SNPs http://www.ncbi.nlm.nih.gov/sites/entrez?db=snp
GeneTests Laboratories performing genetic testing http://www.ncbi.nlm.nih.gov/sites/GeneTests/
IL2RGbase Published mutations in IL2RG http://research.nhgri.nih.gov/scid/
ALPSbase Published mutations in Fas http://research.nhgri.nih.gov/alps/
STAT3base Published mutations in STAT3 http://www3.niaid.nih.gov/labs/aboutlabs/lcid/stat3base/default.htm
IDbases Databases for immunodeficiency-causing mutations http://bioinf.uta.fi/base_root/
RESCUE-ESE Exonic splicing enhancer predictor http://genes.mit.edu/burgelab/rescue-ese/
ESE-Finder Exonic splicing enhancer predictor http://rulai.cshl.edu/tools/ESE2/index.html

dbSNP, single nucleotide polymorphism database; ESE, exonic splicing enhancer; IL2RG, IL-2 receptor, gamma; OMIM, Online Mendelian Inheritance in Man; SNP, single nucleotide polymorphism; STAT3, signal transducer and activator of transcription 3.