Table 1. Statistics of optical map contigs and the anchoring of FPC contigs.

Optical Map Contig Name	Contig Size (Mb)	Ave Frag Size (kb)	# of Sin Mol Maps	Coverage (X)	Ave. SD	Chr. Anchored	FPC Contigs Spanned
OMcontig_0	100.76	22.82	15532	71.75	2.37	1	ctg30–48
OMcontig_1	97.04	22.17	15903	76.15	2.34	4	ctg176–196
OMcontig_2	94.49	23.30	15048	75.14	2.38	2	ctg68–84
OMcontig_3	85.78	22.45	14382	77.58	2.37	1	ctg12–30
OMcontig_4	84.69	22.83	13331	73.39	2.34	8	ctg332–354
OMcontig_5	83.37	22.42	13010	72.46	2.32	2	ctg87–98
OMcontig_6	70.90	22.85	12456	81.35	2.40	6	ctg279–291
OMcontig_7	68.92	22.55	12094	80.65	2.39	5	ctg204–222
OMcontig_8	65.88	22.28	11397	80.45	2.33	10	ctg405–420
OMcontig_9	58.50	23.34	8773	70.35	2.42	4	ctg169–176
OMcontig_10	57.33	24.52	9081	73.21	2.36	7	ctg301–315
OMcontig_11	56.78	23.74	9156	75.18	2.43	3	ctg132–149
OMcontig_12	55.30	23.88	10278	86.38	2.44	3	ctg121–131
OMcontig_13	55.02	22.85	9120	77.25	2.39	3	ctg111–118
OMcontig_14	52.11	23.46	8026	71.65	2.43	5	ctg232–238
OMcontig_15	50.50	22.27	8426	78.10	2.35	1	ctg1–12
OMcontig_16	49.65	23.32	8204	77.72	2.43	8	ctg326–334
OMcontig_17	49.87	23.82	7795	73.13	2.49	4	ctg196–197/ctg376–381
OMcontig_18	46.99	23.05	7207	71.59	2.35	9	ctg371–376
OMcontig_19	47.25	22.50	8293	81.33	2.36	1	ctg51–64
OMcontig_20	43.23	23.17	6762	72.89	2.43	7	ctg292–300
OMcontig_21	40.29	22.25	7508	86.06	2.36	10	ctg392–398
OMcontig_22	38.60	23.87	5760	69.53	2.44	5	ctg223–231
OMcontig_23	38.23	23.18	6946	84.95	2.39	9	ctg383–391
OMcontig_24	33.63	22.48	5434	75.07	2.38	4	ctg160–164
OMcontig_25	29.78	22.80	4650	72.85	2.32	5	ctg238–247
OMcontig_26	27.71	23.76	4893	82.23	2.39	2	ctg99–104
OMcontig_27	26.19	22.83	4524	80.34	2.33	7	ctg317–321
OMcontig_28	25.16	23.70	3491	64.90	2.42	3	ctg121/255
OMcontig_29	24.54	23.53	3940	74.08	2.39	4	ctg170–171
OMcontig_30	24.16	21.59	4135	78.77	2.19	6	ctg267–269
OMcontig_31	23.93	21.69	4254	82.07	2.39	7	ctg322–325
OMcontig_32	23.15	22.88	4041	81.14	2.35	8	ctg354–358
OMcontig_33	22.99	22.08	3921	79.63	2.33	5	ctg248–254
OMcontig_34	21.07	23.46	3421	75.37	2.36
OMcontig_35	20.54	23.89	3269	75.73	2.54	8	ctg359–366
OMcontig_36	20.51	22.48	3457	78.10	2.27	6	ctg265–269
OMcontig_37	20.32	23.52	2882	66.75	2.40	10	ctg399–401
OMcontig_38	16.98	22.37	2766	76.90	2.37	4	ctg199–203
OMcontig_39	16.13	21.85	3174	90.19	2.34	2	ctg108–110
OMcontig_40	15.61	24.98	2272	67.09	2.40	unknown	ctg430
OMcontig_41	14.53	24.17	1831	58.63	2.48	unknown	ctg449
OMcontig_42	14.31	24.02	1981	64.32	2.48	5	ctg231–232
OMcontig_43	13.48	23.48	1775	61.34	2.30	7	ctg300–301
OMcontig_44	13.34	22.01	1989	70.50	2.36	4	ctg156–159
OMcontig_45	13.45	22.91	2001	70.16	2.35	10	ctg401–404
OMcontig_46	13.29	22.99	2069	72.28	2.38	3	ctg118–120
OMcontig_47	12.73	21.32	2088	75.57	2.22	3	ctg150
OMcontig_48	11.86	27.91	1448	58.58	2.60	6	ctg256–260
OMcontig_49	11.49	25.64	1478	60.39	2.51	2	ctg84
OMcontig_50	10.34	25.22	1266	57.16	2.59	2	ctg120
OMcontig_51	10.33	23.05	1475	65.42	2.38	9	ctg368–370
OMcontig_53	8.70	24.51	1255	66.65	2.43	6	ctg271–274
OMcontig_55	8.82	25.28	1043	55.96	2.48	unknown	ctg448
OMcontig_56	7.89	26.03	965	58.37	2.43	1	ctg49
OMcontig_57	7.84	23.19	1103	65.17	2.39
OMcontig_58	6.17	26.02	683	51.11	2.51	2	ctg106–108
OMcontig_59	5.68	22.81	939	77.11	2.40	1	ctg50
OMcontig_60	5.72	21.60	885	70.21	2.37	6	ctg267
OMcontig_61	5.69	23.81	911	76.34	2.45	1	ctg65–67
OMcontig_64	4.52	27.08	491	51.02	2.72	2	ctg106
OMcontig_65	4.16	24.47	521	58.40	2.45	6	ctg264
OMcontig_66	4.14	28.53	593	66.00	2.72	2	ctg105
OMcontig_67	3.89	22.90	565	64.92	2.30	6	ctg263
OMcontig_68	4.04	27.11	487	56.27	2.59	7	ctg321–322
OMcontig_69	3.64	26.37	426	54.63	2.62
Total/ Ave .	2103.93/ 31.88	23.56	339280	71.61	2.41

*Note: Ave Frag Size = average fragment size, Sin Mol Map = single molecule map, Ave. SD = average standard deviation, Chr. = chromosome.