Table 2.
ORF | Gene | Exp1 | Exp2 | Exp3 | Exp4 | Cont1 | Cont2 | Cont3 | Cont4 | Cont5 | Cont6 |
---|---|---|---|---|---|---|---|---|---|---|---|
Rv2657c | — | 1.614 | 1.825 | 2.209 | 1.278 | −0.3 | −0.81 | −0.54 | 0.42 | −0.29 | −0.67 |
Rv2374c | hrcA | 1.472 | 1.747 | 1.461 | 0.375 | −0.36 | −0.58 | −0.57 | −0.31 | −0.41 | −0.56 |
Rv0354c | PPE7 | 0.855 | 0.881 | 0.777 | 1.236 | −0.51 | 0 | −0.63 | 0 | −0.58 | −0.37 |
Rv1364c | — | 1.309 | 1.01 | 0.685 | 1.05 | −0.03 | 0.081 | 0.069 | −0.42 | −0.52 | −0.36 |
Rv2304c | — | 0.893 | 1.17 | 1.051 | 1.16 | 0.115 | −0.29 | −0.31 | 0.35 | 0.015 | −0.01 |
Rv0367c | — | 1.018 | 1.198 | 1.933 | 1.452 | 0.057 | −0.02 | 0.093 | 0.647 | 0.103 | −0.29 |
Rv0607 | — | 0.978 | 0.362 | 0.828 | 0* | −0.77 | −0.39 | −0.78 | −0.69 | −0.77 | −1.33 |
Rv2466c | — | 2.283 | 3.242 | 0.831 | 1.869 | −0.06 | 0.1 | 0.025 | 0.755 | −0.01 | 0.022 |
Rv0830 | — | 1.305 | 0.786 | 0.748 | 0.78 | −0.13 | 0.137 | −0.08 | 0.041 | −0.26 | 0* |
Rv2557 | — | 0.417 | 1.064 | 1.104 | 1.28 | −0.07 | 0.039 | 0.064 | −0.34 | −0.15 | −0.25 |
Rv2142c | — | 2.194 | 2.353 | 0.92 | 1.099 | −0.35 | 00* | −0.18 | −1.24 | 0.668 | 00* |
Rv0654 | — | 2.3 | 1.345 | 1.277 | 0.908 | −0.13 | −0.95 | −0.53 | 0.726 | −0.04 | −0.08 |
Rv1977 | — | 0.395 | 0.434 | 0.537 | 0.61 | −0.28 | −0.65 | −0.23 | −0.36 | −0.1 | −0.32 |
Rv2688c | — | 1.033 | 1.686 | 1.289 | 2.103 | 0.329 | −0.15 | 0.063 | 0.73 | 0.093 | 0.547 |
Rv1285 | cysD | 2.109 | 1.628 | 2.463 | 0.746 | −0.2 | 0.158 | −0.15 | 1.181 | −0.13 | −0.16 |
Rv0047c | — | 1.31 | 1.796 | 1.446 | 1.461 | −0.09 | −0.29 | 1.12 | −0.52 | −0.29 | 0.633 |
Rv2878c | mpt53 | 0.639 | 1.564 | 0.473 | 0.733 | −0.27 | −0.21 | −0.68 | 0.013 | −0.4 | −0.01 |
Rv2254c | — | 1.795 | 2.008 | 0.324 | 0.305 | −0.2 | −0.23 | −0.76 | −0.62 | −0.07 | −0.34 |
Rv1986 | — | 2.467 | 2.354 | 1.131 | 0.666 | 0.295 | 0* | 0.096 | 0.814 | −0.15 | 0* |
Rv2777c | — | −0.26 | 2.052 | 1.453 | 0.792 | −0.88 | −0.11 | −0.74 | −0.21 | −1.17 | −0.46 |
Rv2413c | — | 0.854 | 0.565 | 1.435 | 0.438 | 0.012 | −0.06 | −0.71 | −0.09 | −0.03 | −0.4 |
Rv1929c | — | 0.71 | 0.581 | 1.359 | 0.721 | 0.004 | −0.12 | 0.078 | 0.172 | 0.023 | −0.31 |
Rv3288c | usfY | 1.688 | 1.397 | 1.253 | 0.31 | 0.153 | 0.325 | −0.09 | 0.191 | −0.12 | −0.07 |
Rv2535c | PEPQ | 0.646 | 0.956 | −0.07 | 0.451 | −0.53 | −0.2 | −0.16 | −0.61 | −0.77 | −0.63 |
Rv2634c | PE_PGRS46 | 0.673 | 0.494 | 0.473 | 0.765 | −0.09 | −0.39 | −0.03 | 0.028 | −0.03 | −0.56 |
Rv1646 | PE17 | 1.947 | 2.987 | 0.451 | 1.528 | −0.24 | 0* | −0.32 | 1.113 | −0.48 | 0.124 |
Rv2749 | — | 0.669 | 0.611 | 0.597 | 1.069 | 0.138 | 0.11 | 0.083 | 0.014 | 0.065 | 0.118 |
Rv3452 | cut4 | 0.753 | 0.932 | 1.36 | 0.673 | 0.244 | 0.259 | 0.097 | 0.176 | 0.156 | 0.271 |
Rv0192 | — | 0.74 | 1.674 | 1.227 | 0.694 | 0.424 | 0.158 | −0.04 | 0.044 | 0.365 | 0.077 |
Rv1687c | — | 0.894 | 0.446 | 1.547 | 0.726 | 0.19 | 0.177 | 0.051 | −0.33 | −0.02 | −0.33 |
Rv1087 | PE_PGRS21 | 0.553 | 0.361 | 0.797 | 0.474 | −0.1 | 0.075 | −0.14 | −0.24 | 0.039 | −0.28 |
Rv1566c | — | 1.732 | 1.274 | 1.451 | 1.097 | 0.513 | −0.16 | 0.835 | −0.61 | 0.685 | 0.352 |
Rv2504c | scoA | 0.675 | 0.915 | 1.978 | 0.376 | −0.28 | 0.095 | −0.66 | 0.396 | −0.49 | −0.38 |
Rv0834c | PE_PGRS14 | 0.69 | 1.236 | 0.827 | 1.372 | 0.147 | 0.417 | 0.382 | 0.455 | 0.141 | 0.073 |
Rv0274 | — | 0.189 | 0.424 | 1.123 | 1.799 | −0.19 | 0.002 | −0.49 | −1.47 | −0.11 | −0.41 |
Rv2162c | PE_PGRS38 | 0.631 | 1.093 | 0.436 | 0.478 | −0.1 | −0.14 | −0.34 | 0.191 | −0.04 | −0.04 |
Rv0365c | — | 0.134 | 0.174 | 0.808 | 0.243 | −0.43 | −0.15 | −0.64 | −0.5 | −0.24 | −0.57 |
Rv3550 | ECHA20 | 1.082 | −0.22 | 1.7 | 1.633 | −0.33 | 0.121 | −0.5 | −0.09 | −0.35 | 0* |
Rv3367 | PE_PGRS51 | 0.065 | 0.223 | 0.874 | 0.57 | −0.57 | 0.197 | −0.49 | −0.53 | −0.63 | −0.71 |
Rv2802c | — | −0.15 | 0.542 | 0.319 | 0.016 | −0.31 | −0.5 | −0.95 | −0.42 | −0.66 | −0.68 |
Rv2291 | sseB | 0.528 | 0.31 | 1.646 | 0.867 | −0.18 | −0.09 | −0.35 | −0.01 | −0.04 | 0.071 |
Rv3189 | — | 2.111 | 1.681 | 3.122 | 1.608 | −0.43 | 0.287 | −0.22 | 1.945 | 1.349 | 0* |
Exp1-2: capreomycin. Exp3-4: PA-824. Cont1: INH. Cont2: rifampin. Cont3: ethambutol. Cont4: streptomycin. Cont5: ethionamide. Cont6: Ampicillin.
*The default value in the case of missing values.