Table 2.

The expression values (log₂ ratios) of genes more strongly induced by capreomycin and PA-824 than the other drugs.

ORF	Gene	Exp1	Exp2	Exp3	Exp4	Cont1	Cont2	Cont3	Cont4	Cont5	Cont6
Rv2657c	—	1.614	1.825	2.209	1.278	−0.3	−0.81	−0.54	0.42	−0.29	−0.67
Rv2374c	hrcA	1.472	1.747	1.461	0.375	−0.36	−0.58	−0.57	−0.31	−0.41	−0.56
Rv0354c	PPE7	0.855	0.881	0.777	1.236	−0.51	0	−0.63	0	−0.58	−0.37
Rv1364c	—	1.309	1.01	0.685	1.05	−0.03	0.081	0.069	−0.42	−0.52	−0.36
Rv2304c	—	0.893	1.17	1.051	1.16	0.115	−0.29	−0.31	0.35	0.015	−0.01
Rv0367c	—	1.018	1.198	1.933	1.452	0.057	−0.02	0.093	0.647	0.103	−0.29
Rv0607	—	0.978	0.362	0.828	0*	−0.77	−0.39	−0.78	−0.69	−0.77	−1.33
Rv2466c	—	2.283	3.242	0.831	1.869	−0.06	0.1	0.025	0.755	−0.01	0.022
Rv0830	—	1.305	0.786	0.748	0.78	−0.13	0.137	−0.08	0.041	−0.26	0*
Rv2557	—	0.417	1.064	1.104	1.28	−0.07	0.039	0.064	−0.34	−0.15	−0.25
Rv2142c	—	2.194	2.353	0.92	1.099	−0.35	00*	−0.18	−1.24	0.668	00*
Rv0654	—	2.3	1.345	1.277	0.908	−0.13	−0.95	−0.53	0.726	−0.04	−0.08
Rv1977	—	0.395	0.434	0.537	0.61	−0.28	−0.65	−0.23	−0.36	−0.1	−0.32
Rv2688c	—	1.033	1.686	1.289	2.103	0.329	−0.15	0.063	0.73	0.093	0.547
Rv1285	cysD	2.109	1.628	2.463	0.746	−0.2	0.158	−0.15	1.181	−0.13	−0.16
Rv0047c	—	1.31	1.796	1.446	1.461	−0.09	−0.29	1.12	−0.52	−0.29	0.633
Rv2878c	mpt53	0.639	1.564	0.473	0.733	−0.27	−0.21	−0.68	0.013	−0.4	−0.01
Rv2254c	—	1.795	2.008	0.324	0.305	−0.2	−0.23	−0.76	−0.62	−0.07	−0.34
Rv1986	—	2.467	2.354	1.131	0.666	0.295	0*	0.096	0.814	−0.15	0*
Rv2777c	—	−0.26	2.052	1.453	0.792	−0.88	−0.11	−0.74	−0.21	−1.17	−0.46
Rv2413c	—	0.854	0.565	1.435	0.438	0.012	−0.06	−0.71	−0.09	−0.03	−0.4
Rv1929c	—	0.71	0.581	1.359	0.721	0.004	−0.12	0.078	0.172	0.023	−0.31
Rv3288c	usfY	1.688	1.397	1.253	0.31	0.153	0.325	−0.09	0.191	−0.12	−0.07
Rv2535c	PEPQ	0.646	0.956	−0.07	0.451	−0.53	−0.2	−0.16	−0.61	−0.77	−0.63
Rv2634c	PE_PGRS46	0.673	0.494	0.473	0.765	−0.09	−0.39	−0.03	0.028	−0.03	−0.56
Rv1646	PE17	1.947	2.987	0.451	1.528	−0.24	0*	−0.32	1.113	−0.48	0.124
Rv2749	—	0.669	0.611	0.597	1.069	0.138	0.11	0.083	0.014	0.065	0.118
Rv3452	cut4	0.753	0.932	1.36	0.673	0.244	0.259	0.097	0.176	0.156	0.271
Rv0192	—	0.74	1.674	1.227	0.694	0.424	0.158	−0.04	0.044	0.365	0.077
Rv1687c	—	0.894	0.446	1.547	0.726	0.19	0.177	0.051	−0.33	−0.02	−0.33
Rv1087	PE_PGRS21	0.553	0.361	0.797	0.474	−0.1	0.075	−0.14	−0.24	0.039	−0.28
Rv1566c	—	1.732	1.274	1.451	1.097	0.513	−0.16	0.835	−0.61	0.685	0.352
Rv2504c	scoA	0.675	0.915	1.978	0.376	−0.28	0.095	−0.66	0.396	−0.49	−0.38
Rv0834c	PE_PGRS14	0.69	1.236	0.827	1.372	0.147	0.417	0.382	0.455	0.141	0.073
Rv0274	—	0.189	0.424	1.123	1.799	−0.19	0.002	−0.49	−1.47	−0.11	−0.41
Rv2162c	PE_PGRS38	0.631	1.093	0.436	0.478	−0.1	−0.14	−0.34	0.191	−0.04	−0.04
Rv0365c	—	0.134	0.174	0.808	0.243	−0.43	−0.15	−0.64	−0.5	−0.24	−0.57
Rv3550	ECHA20	1.082	−0.22	1.7	1.633	−0.33	0.121	−0.5	−0.09	−0.35	0*
Rv3367	PE_PGRS51	0.065	0.223	0.874	0.57	−0.57	0.197	−0.49	−0.53	−0.63	−0.71
Rv2802c	—	−0.15	0.542	0.319	0.016	−0.31	−0.5	−0.95	−0.42	−0.66	−0.68
Rv2291	sseB	0.528	0.31	1.646	0.867	−0.18	−0.09	−0.35	−0.01	−0.04	0.071
Rv3189	—	2.111	1.681	3.122	1.608	−0.43	0.287	−0.22	1.945	1.349	0*

Exp1-2: capreomycin. Exp3-4: PA-824. Cont1: INH. Cont2: rifampin. Cont3: ethambutol. Cont4: streptomycin. Cont5: ethionamide. Cont6: Ampicillin.

*The default value in the case of missing values.