Skip to main content
. 2009 May 22;18(7):1469–1485. doi: 10.1002/pro.166

Figure 8.

Figure 8

Example potential energy functions for hydrophobic interactions derived at Ω values of 90°, 120°, and 180°. (A) Energy functions of interacting atom types 8 and 8. Atom type 8 groups Arg-Cβ, Arg-Cγ, Asn-Cβ, Asp-Cβ, Gln-Cβ, Gln-Cγ, Glu-Cβ, Glu-Cγ, His-Cβ, Ile-Cγ1, Leu-Cβ, Lys-Cβ, Lys-Cγ, Lys-Cδ, Met-Cβ, Phe-Cβ, Pro-Cβ, Pro-Cγ, Trp-Cβ, and Tyr-Cβ. (B) Energy functions of interacting atom types 12 and 12. Atom type 12 groups Phe-Cδ1, Phe-Cδ2, Phe-Cɛ1, Phe-Cɛ2, Phe-Cζ, Trp-Cɛ3, Trp-Cζ, Trp-Cζ3, Trp-Cη2, Tyr-Cδ1, Tyr-Cδ2, Tyr-Cɛ1, and Tyr-Cɛ2.