Table II.
Data Collection and Refinement Statistics
| 2′F-3′SiaLacNAc1–4 soak | 3′SiaLacNAc1–3 soak | 2′F-3′SiaLacNAc1–3 soak | |
|---|---|---|---|
| Crystal parameters | |||
| Space group | P43212 | P43212 | P43212 |
| Cell dimensions (Å, Å) | 66.36, 172.37 | 66.23, 172.19 | 66.33, 172.09 |
| Data collection | |||
| Beamline | ESRF BM14 | ESRF BM14 | ESRF BM14 |
| Wavelength (Å) | 0.934 | 0.934 | 0.934 |
| Resolution (Å) | 29.68−2.00 (2.05−2.00) | 27.75−2.00 (2.05−2.00) | 29.66−2.00 (2.05−2.00) |
| Unique observations | 23,882 | 23,609 | 23,986 |
| Rsym | 0.075 (0.246) | 0.074 (0.2228) | 0.076 (0.222) |
| 〈I/σI〉 | 12.7 (4.6) | 11.2 (4.7) | 10.7 (5.6) |
| Completeness (%) | 98.9 (98.8) | 99.3 (100) | 99.4 (100) |
| Redundancy | 3.7 (3.7) | 3.5 (3.6) | 3.9 (3.9) |
| Refinement | |||
| Rwork/Rfree (%) | 16.8/19.1 | 16.5/18.9 | 16.5/20.3 |
| Number of protein residues | 231 | 228 | 228 |
| Number of carbohydrate residues | 1 NeuAc, 1Gal, 5 Glycerol | 1 NeuAc, 1Gal, 1 GlcNAc, 5 Glycerol | 1 NeuAc, 1Gal, 1 GlcNAc, 5 Glycerol |
| Number of noncarbohydrate ligands | 8 Acetates | 8 Acetates | 8 Acetates |
| Number of ions | 1 Cl ion | 1 Cl ion | 1 Cl ion |
| Number of water molecules | 174 | 189 | 191 |
| rmsd stereochemistry | |||
| Bond lengths (Å) | 1.4 | 1.4 | 1.4 |
| Bond angles (°) | 0.014 | 0.013 | 0.014 |
| Ramachandran analysis (%) | |||
| Residues in most favored regions | 89 | 91.3 | 91.3 |
| Residues in additionally allowed regions | 11 | 8.2 | 8.2 |
| Residues in generously allowed regions | 0.5 | 0.5 | 0.5 |
| Residues in disallowed regions | 0 | 0 | 0 |
Numbers in parentheses refer to the outermost resolution shell.
Rsym = ∑ |I − 〈I〉|/∑I where I is the integrated intensity of a given reflection and 〈I〉 is the mean intensity of multiple corresponding symmetry-related reflections.
Rwork = ∑ ||Fo| − |Fc||/∑ Fo where Fo and Fc are the observed and calculated structure factors, respectively.
Rfree = Rwork calculated using ∼ 10% random data excluded from the refinement.
rmsd stereochemistry is the deviation from ideal values.
Ramachandran analysis was carried out using PROCHECK.22