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. 2009 Jul 10;18(9):1935–1947. doi: 10.1002/pro.204

Table II.

Data Collection and Refinement Statistics

2′F-3′SiaLacNAc1–4 soak 3′SiaLacNAc1–3 soak 2′F-3′SiaLacNAc1–3 soak
Crystal parameters
Space group P43212 P43212 P43212
Cell dimensions (Å, Å) 66.36, 172.37 66.23, 172.19 66.33, 172.09
Data collection
Beamline ESRF BM14 ESRF BM14 ESRF BM14
Wavelength (Å) 0.934 0.934 0.934
Resolution (Å) 29.68−2.00 (2.05−2.00) 27.75−2.00 (2.05−2.00) 29.66−2.00 (2.05−2.00)
Unique observations 23,882 23,609 23,986
Rsym 0.075 (0.246) 0.074 (0.2228) 0.076 (0.222)
II 12.7 (4.6) 11.2 (4.7) 10.7 (5.6)
Completeness (%) 98.9 (98.8) 99.3 (100) 99.4 (100)
Redundancy 3.7 (3.7) 3.5 (3.6) 3.9 (3.9)
Refinement
Rwork/Rfree (%) 16.8/19.1 16.5/18.9 16.5/20.3
Number of protein residues 231 228 228
Number of carbohydrate residues 1 NeuAc, 1Gal, 5 Glycerol 1 NeuAc, 1Gal, 1 GlcNAc, 5 Glycerol 1 NeuAc, 1Gal, 1 GlcNAc, 5 Glycerol
Number of noncarbohydrate ligands 8 Acetates 8 Acetates 8 Acetates
Number of ions 1 Cl ion 1 Cl ion 1 Cl ion
Number of water molecules 174 189 191
rmsd stereochemistry
Bond lengths (Å) 1.4 1.4 1.4
Bond angles (°) 0.014 0.013 0.014
Ramachandran analysis (%)
Residues in most favored regions 89 91.3 91.3
Residues in additionally allowed regions 11 8.2 8.2
Residues in generously allowed regions 0.5 0.5 0.5
Residues in disallowed regions 0 0 0

Numbers in parentheses refer to the outermost resolution shell.

Rsym = ∑ |I − 〈I〉|/∑I where I is the integrated intensity of a given reflection and 〈I〉 is the mean intensity of multiple corresponding symmetry-related reflections.

Rwork = ∑ ||Fo| − |Fc||/∑ Fo where Fo and Fc are the observed and calculated structure factors, respectively.

Rfree = Rwork calculated using ∼ 10% random data excluded from the refinement.

rmsd stereochemistry is the deviation from ideal values.

Ramachandran analysis was carried out using PROCHECK.22