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. 2009 Sep 8;37(20):6859–6870. doi: 10.1093/nar/gkp688

Table 2.

Oligoduplexes used in this studya

Oligoduplex Sequence
T/2a 5′ CGCACGCCTTCCTGGAAGCACACTA 3′
3′ GCGTGCGGAAGG2CCTTCGTGTGAT 5′
2/2a 5′ CGCACGCCTTCC2GGAAGCACACTA 3′
3′ GCGTGCGGAAGG2CCTTCGTGTGAT 5′
2NSb 5′ CGCACGCCTTCCTGGAAGCACACTA 3′
3′ GCGTGCGGA2GGACCTTCGTGTGAT 5′
2NS′b 5′ CGCACGCCTTCCTGGAAGCACACTA 3′
3′ GCGTGCGG2AGGACCTTCGTGTGAT 5′
T/A 5′ CGCACGCCTTCCTGGAAGCACACTA 3′
3′ GCGTGCGGAAGGACCTTCGTGTGAT 5′

aOverlapping Ecl18kI/EcoRII-C/PspGI/PfoI recognition site is in boldface; 2 = 2AP, is indicated in boldface and underlined.

bDuplexes 2NS and 2NS′ contain 2AP introduced immediately adjacent to the target site. The 2NS duplex was used in the Ecl18kI/EcoRII-C/PspGI experiment and the 2NS′ duplex was used in the PfoI experiment.