Table 1.
Marker characteristics and single marker associations (p-values) in the ICCSS sample.
| Marker | Function | HWE | Genotype(freq.) | p value | Allele (freq.) | p value | Odds ratio [95%CI] |
||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| rs133946 | 5'-promoter | 0.29 | GG | GC | CC | G | C | ||||
| Case | 178(0.276) | 320(0.495) | 148(0.229) | 0.319 | 676(0.523) | 616(0.477) | 0.170 | 1.115 | |||
| Control | 160(0.257) | 297(0.477) | 165(0.265) | 617(0.496) | 627(0.504) | (0.954 –1.303) | |||||
| rs133945 | 5'-promoter | 0.52 | GG | GA | AA | G | A | ||||
| Case | 178(0.273) | 325(0.499) | 148(0.227) | 0.293 | 681(0.523) | 621(0.477) | 0.136 | 1.125 | |||
| Control | 159(0.251) | 308(0.486) | 167(0.263) | 626(0.494) | 642(0.506) | (0.963–1.313) | |||||
| rs9862 | SYN3 intron; TIMP1 exon |
0.56 | CC | CT | TT | C | T | ||||
| Case | 170(0.267) | 314(0.492) | 154(0.241) | 0.558 | 654(0.513) | 622(0.487) | 0.901 | 0.993 | |||
| Control | 161(0.254) | 331(0.522) | 142(0.224) | 651(0.515) | 615(0.485) | (0.851–1.160) | |||||
| rs1056484 | 3'-UTR | 0.59 | CC | CT | TT | C | T | ||||
| Case | 238(0.371) | 306(0.477) | 97(0.151) | 0.717 | 782(0.610) | 500(0.390) | 0.572 | 1.047 | |||
| Control | 231(0.366) | 294(0.466) | 106(0.168) | 756(0.599) | 506(0.401) | (0.893–1.227) | |||||