Table 2.
Variable sites and haplotypes detected in T. infestans from Argentina (Arg), Bolivia (Bol), Peru (Per), and Uruguay (Uru)
| n | n | n | |||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 3 | 3 | 3 | 3 | 3 | 3 | 4 | 4 | 4 | 4 | 4 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 6 | |||||||
| 1 | 3 | 5 | 8 | 9 | 0 | 0 | 1 | 1 | 2 | 3 | 3 | 4 | 4 | 5 | 6 | 7 | 8 | 0 | 0 | 3 | 3 | 3 | 6 | 6 | 0 | 0 | 4 | 4 | 5 | 6 | 0 | 1 | 7 | 8 | 9 | 1 | 1 | 2 | 2 | 2 | 4 | 5 | 5 | 5 | 6 | 8 | 6 | ||
| 9 | 4 | 0 | 8 | 7 | 3 | 6 | 2 | 3 | 4 | 3 | 9 | 2 | 5 | 1 | 3 | 3 | 7 | 2 | 3 | 3 | 5 | 9 | 2 | 6 | 7 | 8 | 0 | 6 | 5 | 7 | 0 | 9 | 8 | 7 | 6 | 1 | 4 | 6 | 7 | 9 | 7 | 0 | 3 | 9 | 5 | 6 | 1 | ||
| Haplo a | A | C | T | G | A | A | C | T | C | T | C | A | G | T | T | C | T | A | C | G | A | G | G | T | C | T | T | T | A | T | C | T | T | A | C | T | G | C | G | A | A | A | A | A | T | T | C | A | Arg(SE) |
| Haplo c | . | . | . | . | . | G | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | . | . | . | . | . | . | . | . | Arg(LR, SE, SF, CA, FO, SA, TU, SJ), Uru |
| Haplo d | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | . | . | . | . | . | . | . | . | Arg(SF, SE, CA), Uru |
| Haplo e | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | . | . | . | . | . | . | . | . | Arg(LR, SE, CO) |
| Haplo f | . | . | . | . | . | G | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Arg(LR) |
| Haplo g | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . | C | . | . | . | . | . | . | A | . | . | G | . | . | . | . | . | . | . | . | Arg(LR) |
| Haplo i | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | . | . | . | G | . | . | . | . | . | G | . | . | . | . | . | . | . | . | Arg(LR) |
| Haplo j | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | . | C | . | . | . | . | . | . | . | G | . | . | . | . | . | . | . | . | Arg(LR) |
| Haplo k | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | A | . | . | . | . | C | . | . | . | . | . | . | . | . | . | . | T | . | G | . | . | . | . | . | . | . | . | Arg(SE) |
| Haplo l | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | A | . | . | G | . | . | . | . | . | . | T | . | Arg(SE) |
| Haplo m | . | . | . | . | . | G | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | A | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | . | . | . | . | . | . | . | . | Arg(SA) |
| Haplo n | . | . | . | . | . | G | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | . | . | . | . | . | . | . | G | . | . | . | . | . | . | . | . | Arg(SA, FO) |
| Haplo o | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | . | . | . | . | . | . | . | . | Arg(CA) |
| Haplo p | . | . | . | . | . | . | . | . | . | . | . | . | A | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | T | . | . | . | . | . | . | . | Arg (SE) |
| Haplo q | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | . | . | . | . | C | . | . | . | Arg(LR, SF) |
| Haplo s | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | . | . | . | . | . | . | . | . | Arg(SE, CA) |
| Haplo t | . | . | . | . | . | . | . | . | . | . | . | . | A | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | . | . | . | . | . | . | . | . | Arg(SF, SE) |
| Haplo u | . | . | . | . | . | . | . | . | T | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | . | . | . | . | . | . | . | . | Arg(FO) |
| Haplo v | . | . | . | . | . | G | . | . | . | . | . | . | . | . | . | . | . | G | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | . | . | . | . | . | . | . | . | Arg(TU) |
| Haplo w | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | . | . | . | . | T | . | . | . | . | G | . | . | . | . | . | . | . | . | Arg(SE) |
| Haplo z | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | . | . | . | . | . | . | . | . | A | G | . | . | . | . | . | . | . | . | Arg(RN) |
| Haplo af | . | . | . | . | . | G | . | . | . | . | . | . | . | . | . | . | . | . | . | A | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | . | . | . | . | . | . | . | . | Arg(SF) |
| Haplo ag | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | A | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | . | . | . | . | . | . | . | . | Arg(SF) |
| Haplo ah | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | . | . | . | . | . | . | . | . | . | . | G | . | . | . | . | . | . | . | . | Arg(SF) |
| Haplo ai | . | . | . | . | G | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | . | . | . | . | . | . | A | . | . | G | . | . | . | . | . | . | . | . | Arg(SF) |
| Haplo b | . | . | . | . | . | . | T | C | . | C | T | . | A | . | . | T | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | G | . | . | G | . | . | . | . | . | Arg (SE) |
| Haplo h | . | . | . | . | . | . | T | C | . | C | . | . | A | . | C | T | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | A | G | . | . | . | . | . | . | . | . | Arg(LR) |
| Haplo r | . | . | . | . | . | . | . | C | . | C | . | G | A | . | . | T | . | . | . | . | . | . | . | . | T | . | . | . | . | . | . | . | . | . | . | . | . | . | A | G | . | G | . | . | . | . | . | . | Arg (SE) |
| Haplo x | . | . | . | . | . | . | T | C | . | C | . | . | A | . | . | T | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | . | C | . | . | A | G | . | . | . | . | . | . | . | . | Arg(SJ, RN, SL) |
| Haplo y | . | . | . | . | . | . | . | C | . | C | . | . | A | . | . | T | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | A | G | . | . | . | . | . | . | . | . | Arg(SJ) |
| Haplo av | . | . | . | . | . | . | T | C | . | C | . | . | A | . | . | T | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | A | G | . | . | . | . | . | . | . | . | Arg(CO) |
| Haplo ay | . | . | C | . | . | . | T | C | . | C | . | . | A | . | . | T | . | . | . | . | G | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | . | . | . | G | . | . | . | . | Arg (SL) |
| Haplo ab | G | . | . | A | . | . | . | C | . | C | . | . | A | . | . | T | C | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | A | G | . | G | . | . | . | . | T | . | Bol (dom, syl) |
| Haplo ac | G | . | . | . | . | . | . | C | . | C | . | . | A | . | . | T | C | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | A | G | . | G | . | . | . | . | T | . | Bol (dom, syl) |
| Haplo ad | G | . | . | A | . | . | . | C | . | C | . | . | A | . | . | T | C | . | . | . | . | . | . | . | . | . | . | . | . | . | T | C | . | . | . | . | . | . | A | G | . | G | . | . | . | . | T | . | Bol (dom) |
| Haplo ae | G | . | . | A | . | . | . | C | . | C | . | . | A | . | . | T | C | . | . | . | . | . | . | . | . | . | . | . | . | . | T | . | . | . | . | . | . | . | A | G | . | G | . | . | . | . | T | . | Bol (dom, syl), Perú |
| Haplo aa | . | T | . | . | . | . | T | C | T | C | . | . | A | . | . | T | C | . | T | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | A | G | . | G | . | . | . | C | T | G | Bol (dm) |
Dot, identity with nucleotide in first haplotype; n, nonsynonymous change; SA, Salta; FO, Formosa; CA, Catamarca; TU, Tucumán; SE, Santiago del Estero; SF, Santa Fé; LR, La Rioja; CO, Córdoba; SJ, San Juan; SL, San Luis; RN, Río Negro; dom, domestic; syl, sylvatic; dm, dark morph.