Table 3.
Estimates of COI variability and results of neutrality tests in Argentinean, Bolivian, Peruvian, and Uruguayan T. infestans
N | S | k | θw | π | h | Hd | DT | FS | R2 | |
---|---|---|---|---|---|---|---|---|---|---|
Arg | 207 | 40 | 3.864 | 0.0102 | 0.0059 | 32 | 0.812 | −1.248 | −10.732a | 0.048b |
Arg (1 per structure) | 104 | 39 | 3.525 | 0.0113 | 0.0053 | 31 | 0.830 | −1.640a | −16.741c | 0.044a |
Arg (1 per locality) | 39 | 19 | 3.714 | 0.0068 | 0.0056 | 15 | 0.780 | −0.573 | −3.784b | 0.092 |
SE | 52 | 23 | 2.748 | 0.0077 | 0.0042 | 12 | 0.805 | −1.482a | −1.980 | 0.060b |
LR | 22 | 16 | 2.563 | 0.0067 | 0.0039 | 8 | 0.771 | −1.512a | −1.121 | 0.115 |
SJ | 15 | 9 | 4.400 | 0.0042 | 0.0067 | 3 | 0.676 | 2.211a | 5.847 | 0.244 |
SF | 15 | 9 | 2.152 | 0.0042 | 0.0033 | 8 | 0.838 | −0.834 | −2.811 | 0.103 |
RN | 15 | 8 | 3.352 | 0.0037 | 0.0051 | 2 | 0.419 | 1.335 | 7.074 | 0.210 |
SL | 8 | 6 | 2.571 | 0.0035 | 0.0039 | 2 | 0.429 | 0.518 | 4.286 | 0.214 |
CO | 14 | 7 | 2.201 | 0.0033 | 0.0056 | 2 | 0.527 | 2.500c | 7.349 | 0.264 |
CA | 15 | 3 | 1.067 | 0.0014 | 0.0016 | 4 | 0.533 | 0.464 | 1.069 | 0.178 |
FO | 17 | 3 | 0.353 | 0.0013 | 0.0005 | 3 | 0.228 | −1.706b | −0.963 | 0.171 |
SA | 15 | 2 | 0.686 | 0.0009 | 0.0014 | 3 | 0.600 | 0.302 | 0.160 | 0.171 |
TU | 19 | 2 | 0.526 | 0.0004 | 0.0008 | 2 | 0.526 | 1.547 | 1.452 | 0.263 |
Bol (dom) | 14 | 3 | 1.242 | 0.0014 | 0.0019 | 4 | 0.780 | 0.968 | 0.057 | 0.168 |
Bol (syl) | 10 | 2 | 0.667 | 0.0011 | 0.0010 | 3 | 0.511 | −0.184 | −0.272 | 0.190 |
Uru | 5 | 1 | 0.400 | 0.0007 | 0.0006 | 2 | 0.400 | −0.817 | 0.090 | 0.400 |
Per | 7 | 0 | 0.000 | 0.0000 | 0.0000 | 1 | 0.000 | — | — | — |
P < 0.05
0.09 < P; and
P < 0.01.
N, no. of sequences; S, no. of segregating sites; k, mean no. of pairwise differences per sequence; θw, Watterson’s estimator; π, Tajima’s estimator; h, no. of haplotypes; Hd, haplotype diversity; DT, Tajima’s test; FS, Fu’s test; R2, Ramos-Onsins and Rozas’ test.