Table 1.
Sequence-based alignment | Function-based alignment | Combined method | MaWISH | Network blast | Combined method 3-way | Simultaneous clustering | GO clustering | |
---|---|---|---|---|---|---|---|---|
Number of clusters | 74 | 94 | 303 | 242 | 2353 | 430 | 1197 | 1093 |
Number of proteins | 457 | 727 | 1479 | 543 | 894 | 1603 | 7371 | 6663 |
MIPS coverage | 96 | 126 | 283 | 83 | 153 | 327 | 424 | 346 |
MIPS accuracy | 0.18 | 0.24 | 0.21 | 0.1 | 0.08 | 0.17 | 0.05 | 0.03 |
Functional coherence | 0.36 | 0.51 | 0.43 | 0.32 | 0.3 | 0.40 | 0.23 | 0.29 |
Run time (s) | 3061 | 5432 | 21 | 663 | 68 977 | 29 | 369 | 112 |