Table 1.

SNPs analyzed, organized by gene

Chromosome 1

RAD54L: rs104877

Chromosome 2

XRCC5: *[rs3770521, rs3815855], rs2303400, rs3821107, [rs9288518, rs2440], rs207887

Chromosome 5

XRCC4: rs2075685, rs10474081, rs1120476, rs10514249, rs2731858, rs1193695, rs301279, [rs1056503, rs9293337]

RAD50: rs10520114, rs2240032

Chromosome 7

XRCC2: rs3218536, [rs3218499, rs3218408, rs3218374], rs3218373, rs6464268

Chromosome 8

NBS1: [rs1063054, rs1063053], rs6470522, [rs709816, rs1805786, rs7010210, rs2234744, rs741778, rs1805794, rs1063045]

RAD21: [rs16888887, rs2289938, rs1050838], [rs16888927, rs3816342, rs16888997, rs16889040]

Chromosome 11

MRE11A: rs499952, rs654718, rs533984

ATM: [rs228591, rs623860, rs228592, rs1801516, rs170548]

Chromosome 12

RAD52: rs7310449, [rs11571476, rs10744729], rs9634161, rs10849594, rs1833095, rs7311151, rs2887532, rs2887531, rs3748523

Chromosome 13

BRCA2: rs206143, rs1799943, [rs3752451, rs2126042, rs144848, rs1801406, rs3764792], rs542551, [rs206340, rs1012129, rs15869]

LIG4: rs1805388

Chromosome 15

RAD51, rs2619681, [rs12593359, rs11855560, rs11852786]

Chromosome 17

TP53: rs2909430

BRCA1: [rs12516, rs2236762], rs3737559, [rs799917, rs16940, rs1799949, rs799923]

BRIP1: rs4986763, [rs4986764, rs4986765, rs6504063, rs2158005, rs2191249], rs9897928, rs1978244, [rs6504072, rs12453935], rs2378908, [rs4988344, rs4968451], rs12451910

Chromosome 19

ZNF350: rs2278414, [rs4988334, rs2278416, rs2278418, rs2278419], rs8112515

^*Brackets are used to denote those SNPs located within the same haplotype block, where haplotype blocks were defined using the method described by Gabriel et al. (49).