Table 1.
Gene (accession number) | Primer sequence (5′ → 3′) |
T (°C) | N | S (bp) | |
---|---|---|---|---|---|
LuEF1α | Sense | TTGGATACAACCCCGACAAAA | 60 | 31 | 100 |
Anti-sense | GGGCCCTTGTACCAGTCAAG | ||||
Lupmet | Sense | GGRCCATCRAARCACCARGC | 55 | 30 | 158 |
Anti-sense | AAGATGARGTCGACKGTSCC | ||||
Lupme1 (AF355056) | Sense | CATCAACCCCAACTTCCTCCTC | 55 | 35 | 223 |
Anti-sense | CCCACCACCGCAGTTTTAATATC | ||||
Lupme3 (AF188895) | Sense | ACCGGTCCATGTATCGC | 55 | 32 | 178 |
Anti-sense | TGACGTGCTCATTGTCTC | ||||
Lupme5 (AF355057) | Sense | CGCCGCCGTTTTATCC | 53 | 35 | 176 |
Anti-sense | CGCACAGCTCGATGCA | ||||
Flxper1 (L07554) | Sense | TACTTCACCAATCTCCAGACC | 58 | 29 | 101 |
Anti-sense | GCGAACCTGTTGACGAGCTC | ||||
Flxper2 (L24120) | Sense | CCACTCCGACCAAGTCCTGTT | 58 | 32 | 133 |
Anti-sense | CAGTGAGGGGCTTGATGTCT | ||||
Flxper3 (U59284) | Sense | CGACAACAAGTATTATGTTGACTTG | 60 | 30 | 185 |
Anti-sense | ACCGGTCAACACGCTTATCTGC | ||||
Flxper4 (AF049881) | Sense | TACCAGGATCTGGTGGCGAG | 58 | 35 | 98 |
Anti-sense | TTGTTGCTGTAAGTCCTCACC |
A theoretical total Lupmet was obtained using degenerate primers designated as the most common sequences within the three Lupme genes.