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. Author manuscript; available in PMC: 2010 Nov 11.
Published in final edited form as: Structure. 2009 Nov 11;17(11):1515–1527. doi: 10.1016/j.str.2009.09.006

Table 1.

The accuracy measured by Q60° for torsion angles obtained by TOPOS based on NMR chemical shifts (Cavalli et al., 2007) and predicted by SPINE XI for 11 proteins.

Protein PDB IDa Lb %α/β/coilc TOPOS(%)d SPINE XI(%)
Bet v 4 1h4b 84 64/4/32 96 94.0
Calbindin 3icb(X) 74 60/0/40 95 86.7
FF domain 1uzc 54 77/0/23 86 94.2
HPr 1poh(X) 85 37/29/34 86 87.1
Sda 1pv0 46 60/0/40 86 89.1
Δ27-GG 1sa8 106 0/65/35 77 78.3
TM1442 1sbo 110 44/20/36 90 91.8
Ubiquitin 1ubq(X) 76 25/32/43 93 93.4
MrR5 1yvc 70 0/51/49 75 75.7
PhS018 2glw 92 21/50/29 91 83.7
Sen15 2gw6 123 32/29/39 91 81.3
Ave. 38/26/36 88 86.9
a

Protein Data Bank Identification Number. The method used to solve the structure is NMR unless it is specifically indicated as (X) for X-ray.

b

Number of residues.

c

Fraction of helical, strands, and coil residues (Cavalli et al., 2007).

d

From Ref. (Cavalli et al., 2007).