Table 1.
The accuracy measured by Q60° for torsion angles obtained by TOPOS based on NMR chemical shifts (Cavalli et al., 2007) and predicted by SPINE XI for 11 proteins.
Protein | PDB IDa | Lb | %α/β/coilc | TOPOS(%)d | SPINE XI(%) |
---|---|---|---|---|---|
Bet v 4 | 1h4b | 84 | 64/4/32 | 96 | 94.0 |
Calbindin | 3icb(X) | 74 | 60/0/40 | 95 | 86.7 |
FF domain | 1uzc | 54 | 77/0/23 | 86 | 94.2 |
HPr | 1poh(X) | 85 | 37/29/34 | 86 | 87.1 |
Sda | 1pv0 | 46 | 60/0/40 | 86 | 89.1 |
Δ27-GG | 1sa8 | 106 | 0/65/35 | 77 | 78.3 |
TM1442 | 1sbo | 110 | 44/20/36 | 90 | 91.8 |
Ubiquitin | 1ubq(X) | 76 | 25/32/43 | 93 | 93.4 |
MrR5 | 1yvc | 70 | 0/51/49 | 75 | 75.7 |
PhS018 | 2glw | 92 | 21/50/29 | 91 | 83.7 |
Sen15 | 2gw6 | 123 | 32/29/39 | 91 | 81.3 |
Ave. | 38/26/36 | 88 | 86.9 |
Protein Data Bank Identification Number. The method used to solve the structure is NMR unless it is specifically indicated as (X) for X-ray.
Number of residues.
Fraction of helical, strands, and coil residues (Cavalli et al., 2007).
From Ref. (Cavalli et al., 2007).