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. Author manuscript; available in PMC: 2010 Apr 30.
Published in final edited form as: J Comput Chem. 2009 Apr 30;30(6):884–892. doi: 10.1002/jcc.21105

Table 3.

Statistical Analysis for Application of 10 Density Functionals to Ubiquitin.

DensityaFunctional Rb SDc (ppm) Ca-rmsdd (ppm) CPU Timee (s)
OPBE 0.902 2.04 (1.72) 2.12 3475.97
O3LYP 0.905 2.01 (1.69) 2.16 6587.23
OPW91 0.903 2.03 (1.69) 2.12 3488.24
BPW91 0.908 1.99 (1.60) 2.30 3624.62
OB98 0.908 1.98 (1.62) 2.19 3559.61
BPBE 0.907 1.99 (1.59) 2.30 3605.91
B971 0.905 2.02 (1.80) 2.22 6531.22
OLYP 0.906 2.00 (1.60) 2.18 3668.72
PBE1PBE 0.902 2.04 (1.84) 2.21 6767.88
B3LYP 0.905 2.01 (1.70) 2.34 6686.93
a

This column contains the list of the 10 functionals tested in this work. The best result for each functional (in terms of these parameters) is high-lighted in bold face in Columns 2–4.

b

The correlation coefficient, R, (or Pearson coefficient) between the observed and the conformational-averaged 13Cα chemical shifts, computed with eq. (2), for each of the functionals listed in Column 1.

c

Standard deviation of the computed conformational-averaged 13Cα chemical shifts from a linear regression. The standard deviation (σ) of the Normal (or Gaussian) curve that fits the frequency of the error distribution computed by using an effective TMS value as given by Table 2 (see “Materials and Methods” section) is shown in parentheses.

d

Ca-rmsd was computed by using eq. (3), as described in the “Materials and Methods” section. For each functional, the ca-rmsd was computed by using the effective TMS value listed in Table 1.

e

Averaged-CPU time computed by using eq. (5) from conformation 1 out of 10 conformations of 1D3Z. The CPU times that, on average, require ~1 h are set in bold face.