Table 2.
Relative L2 percentile of viral codon adaptation to their hosts
| Tax | ID | Virus–hosts | % L2 similaritya | |
|---|---|---|---|---|
| 1 | M | HUM | Human | 4 |
| 2 | SQUM | Squirrel monkey | 77 | |
| 3 | MAC | Macaque | 53 | |
| 4 | RAT | Rat | 8 | |
| 5 | MOUS | Mouse | 67 | |
| 6 | PIG | Pig | 72 | |
| 7 | BOVN | Bovine | 53 | |
| 8 | SHP | Sheep | 86 | |
| 9 | HORS | Horse | 54 | |
| 10 | CAT | Cat | 45 | |
| 11 | DOG | Dog | 57 | |
| 12 | A | CHK | Chicken | 51 |
| 13 | I | MOSQ | Tiger mosquito | 63 |
| 14 | COMO | Codling moth | 44 | |
| 15 | CHIL | Rice stem borer | 69 | |
| 16 | AMMO | Noctuid moth | 15 | |
| 17 | P | ARAB | Arabidopsis | 9 |
| 18 | LET | Lettuce | 12 | |
| 19 | RICE | Rice | 18 | |
| 20 | TOM | Tomato | 1 | |
| 21 | B | BACI | Bacillus | 1 |
| 22 | CHLM | Chlamydia | 57 | |
| 23 | ENCO | Enterococcus | 11 | |
| 24 | LACO | Lactococcus | 13 | |
| 25 | MYBC | Mycobacteria | 2 | |
| 26 | MYPL | Mycoplasma | 7 | |
| 27 | PSDO | Pseudomonas | 19 | |
| 28 | SALM | Salmonella | 12 | |
| 29 | STRP | Streptomyces | 36 | |
| 30 | ECOL | Escherichia coli | 36 |
aRelative L2 percentile values calculated between virus and host, where lower values indicate higher observed similarity (see Figure 6B). The most adapted virus–host pairs are indicated in bold.