Table 2.
Relative L2 percentile of viral codon adaptation to their hosts
Tax | ID | Virus–hosts | % L2 similaritya | |
---|---|---|---|---|
1 | M | HUM | Human | 4 |
2 | SQUM | Squirrel monkey | 77 | |
3 | MAC | Macaque | 53 | |
4 | RAT | Rat | 8 | |
5 | MOUS | Mouse | 67 | |
6 | PIG | Pig | 72 | |
7 | BOVN | Bovine | 53 | |
8 | SHP | Sheep | 86 | |
9 | HORS | Horse | 54 | |
10 | CAT | Cat | 45 | |
11 | DOG | Dog | 57 | |
12 | A | CHK | Chicken | 51 |
13 | I | MOSQ | Tiger mosquito | 63 |
14 | COMO | Codling moth | 44 | |
15 | CHIL | Rice stem borer | 69 | |
16 | AMMO | Noctuid moth | 15 | |
17 | P | ARAB | Arabidopsis | 9 |
18 | LET | Lettuce | 12 | |
19 | RICE | Rice | 18 | |
20 | TOM | Tomato | 1 | |
21 | B | BACI | Bacillus | 1 |
22 | CHLM | Chlamydia | 57 | |
23 | ENCO | Enterococcus | 11 | |
24 | LACO | Lactococcus | 13 | |
25 | MYBC | Mycobacteria | 2 | |
26 | MYPL | Mycoplasma | 7 | |
27 | PSDO | Pseudomonas | 19 | |
28 | SALM | Salmonella | 12 | |
29 | STRP | Streptomyces | 36 | |
30 | ECOL | Escherichia coli | 36 |
aRelative L2 percentile values calculated between virus and host, where lower values indicate higher observed similarity (see Figure 6B). The most adapted virus–host pairs are indicated in bold.