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The native and predicted secondary structures of mRNA-Hs-Prp pseudoknotted RNA. (A) The native structure taken from the PseudoBase cite (http://www.ekevanbatenburg.nl/PKBASE/PKB.HTML). (B) The best candidate secondary structure in the candidate list that is most similar to the native secondary structure. Compared with the native structure, it overestimates the number of base pairs (SE = 1, PPV = 0.65) and has an uncommon pseudoknotted structure.
