Table 3.

Alignments in relation to gene loci

		Total	Genomic sequences	ESTs	Genes
In gene loci	Only in last exon	471			471
	In last and other exon(s)	132			132a
	Not in last exon	138			138
	After 3′ end	181	6	16	159
	Intron	98	40	10	48
	Subtotal	1020	46	26	948
Outside gene loci		30	17	13
Total		1050	63	39	948

Genomic alignments were divided into three groups: ‘ESTs’ (3.7%), ‘genomic sequences’ (6.0%), and ‘genes’ (90.3%). Majority of the cDNA fragments that aligned with genes are aligned with the last exon. A significant number of the cDNAs aligned with the region 3′ to the last exon. See Material and Methods for details.

^aForty-four hits are in genes with only one exon.