Table 2.
General approaches for protein interaction extraction
| Method | Information | Algorithm | Data sets |
|---|---|---|---|
| [2] | lexical | SVM | AIMed |
| [4] | lexical | SVM | AIMed |
| shallow | LLL | ||
| [9] | lexical | Maximum entropy | IEPA |
| shallow | |||
| deep | |||
| [10] | lexical | SVM | AIMed |
| shallow | |||
| deep | |||
| [5] | lexical | BayesNet | AIMed |
| deep | NaiveBayes | ||
| K-nearest neighbour | |||
| Ensembles | |||
| [3] | lexical | Hand-built rules | HPRD50 |
| shallow | LLL | ||
| deep | |||
| [15] | shallow | C4.5 | AIMed |
| deep | BayesNet | LLL | |
| [7] | lexical | SVM | AIMed |
| deep | |||
| [1] | lexical | Sparse RLS | AIMed |
| shallow | BioInfer | ||
| deep | HPRD50 | ||
| IEPA | |||
| LLL | |||
| [6] | lexical | SVM | LLL |
| shallow | |||
| deep | |||
| [8] | lexical | SVM | AIMed |
| shallow | HPRD50 | ||
| deep | IEPA | ||
| LLL | |||