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. Author manuscript; available in PMC: 2009 Nov 25.
Published in final edited form as: J Med Chem. 2008 Apr 12;51(9):2668–2675. doi: 10.1021/jm701444y

Table 2. Characterization of the NMR structures of the analogues studied by NMR.

ID# NOE
distance
restraints
Angle
restraints
***
CYANA
Target
function**
Backbone
RMSD
(Å)
Overall
RMSD
(Å)
CFF91 energies
(Kcal/mol)
Residual restraint violations on
Total
energy
Van der
Waals
Electro-
static
Distances Dihedral Angles
No.
≥ 0.1 Å
Max
(Å)
No. ≥
1.5 deg
Max
(deg)
1 116 22 0.001 0.65 ± 0.12 1.39 ± 0.21 192.7±18 100.5 ± 3 30.2 ± 2 0.1 ± 0.1 0.04 ± 0.03 0 ± 0 0 ± 0
3 163 18 0.08 0.18 ± 0.09 0.62 ± 0.12 214.3 ± 4 142.7± 2 71.6 ± 3 0.9 ± 0.1 0.12 ± 0.04 0 ± 0 0 ± 0
18 110 16 0.08 0.13 ± 0.04 0.72 ± 0.15 178.2 ± 2 132.5 ± 2 45.7 ± 1 0.8 ± 0.0 0.09 ± 0.00 0.9 ± 0 0.9 ± 0.04
19 88 24 0.11 0.72 ± 0.20 1.12 ± 0.15 185.5 ± 6 137.2 ± 6 48.3 ± 8 1.0 ± 0.2 0.15 ± 0.06 0.5 ± 0.5 0.4 ± 0.4
21 111 29 0.015 0.17 ± 0.07 0.79 ± 0.21 193.2 ± 4 143.8 ± 2 49.5 ± 2 0.3 ± 0.1 0.50 ± 0.07 0 ± 0 0 ± 0.04
*

The bundle of 20 conformers with the lowest residual target function was used to represent the NMR structures of each analogue.

**

The target function is zero only if all the experimental distance and torsion angle constraints are fulfilled and all non-bonded atom pairs satisfy a check for the absence of steric overlap. The target function is proportional to the sum of the square of the difference between calculated distance and isolated constraint or van der Waals restraints and similarly isolated angular restraints are included in the target function. For the exact definition see reference.42

***

Meaningful NOE distance restraints may include intra-residual and sequential NOEs.42

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