Table 4.
Ligand binding by recombinant SBPs determined using fluorescence emission quenching of proteins upon binding of the apo- and ferric form of ligands and molecular weights of SBPs and complexes of proteins with the siderophores determined by ESI-MS.
Protein | Liganda | Expected ligand charge at pH 7 | Kd (nM)b | Molecular weight (Da) | |
---|---|---|---|---|---|
Calculatedc | Measuredd | ||||
FeuA (Bc_3738) | 37094.6 | 37093 | |||
BB | [BB]0 | 59 (11) | 37976.6 | 37976 | |
FeBB | [FeIII(BB)]3- | 19 (1) | 38029.6 | 38029 | |
Ent | [Ent] 0 | 36 (3) | 37763.6 | 37763 | |
FeEnt | [FeIII(Ent)]3- | 12 (3) | 37816.6 | 37817 | |
FatB (Bc_5106) | 37675.4 | 37675 | |||
PB | [PB]0 | 77 (9) | 38393.4 | NDf | |
FePB | [FeIII(PB)]3- | 127 (1) | 38446.4 | 38445 | |
FePBν | [FeIII(PBν)]2- | 135 (47) | 30401.4 | 38400 | |
3,4-DHB | [3,4-DHB]1- | 191 (69) | 37829.4 | ND | |
Fe(3,4-DHB) | [FeIII(3,4-DHB)]0 | nde | 37884.4 | 37884 | |
Fe(3,4-DHB)2 | [FeIII(3,4-DHB)2]3- | 1.2 (0.7) | 38037.4 | 38038 | |
FpuA (Bc_4528) | 37166.3 | 37165 | |||
PB | [PB]0 | 23 (8) | 37885.3 | ND | |
FePB | [FeIII(PB)]3- | 175 (35) | 37937.3 | 37937 | |
FePBν | [FeIII(PBν)]2- | 699 (169) | 37891.3 | 37889 | |
3,4-DHB | [3,4-DHB]0 | nd | 37320.3 | ND | |
Fe(3,4-DHB) | [FeIII(3,4-DHB)]1- | nd | 37375.3 | 37374 | |
YfiY (Bc_0616) | 37118.3 | 37116 | |||
Sch | [Sch]0 | 495 (33) | 37537.3 | 37535 | |
FeSch | [FeIII(Sch)]0 | 34 (3) | 37590.3 | 37589 | |
FeSchν | [FeIII(Schν)]1+ | 298 (114) | 37545.3 | ND | |
YxeB (Bc_0383) | 36093.8 | 36094 | |||
DFO | [DFO]1+ | nd | 36654.1 | ND | |
FeDFO | [FeDFO]1+ | 18 (4) | 36706.8 | 36707 | |
Fch | [Fch]0 | nd | 36781.1 | ND | |
FeFch | [FeFch]0 | 30 (1) | 36833.8 | 36833 |
bacillibactin (BB), enterobactin (Ent), petrobactin (PB), petrobactin photoproduct (PBν), 3,4-dihydroxybenzoic acid (3,4-DHB), schizokinen and its photoproduct (Sch and Schν, respectively), desferrioxamine (DFO), and ferrichrome (Fch)
The dissociation constants (Kd) were determined from fluorescence data and are the mean of at least three independent measurements with SD given in parenthesis,
Calculated masses of noncovalent complexes were computed using masses of neutral ligand species,
Mass measured ± 1 Da,
nd – not determined,
ND – not detected.