Table 1. Examples of viral IRES elements.
Virus Family | Virus | Known ITAFs |
---|---|---|
DNA viruses | ||
Herpesvirus | Kaposi-sarcoma-associated herpesvirus (KSHV) | |
Polyomavirus | Simian vacuolating virus 40 (SV40) | |
Nimavirus | White spot syndrome virus (WSSV) | |
RNA viruses | ||
Picornaviruses | Poliovirus (PV) | PTB, PCBP2, PCBP1, La, unr SRp20 |
Coxsackievirus B3 (CVB3) | PCBP2, La | |
Enterovirus 71 (EV71) | ||
Hepatitis A virus (HAV) | PTB, PCBP2 | |
Human rhinovirus (HRV) | PTB, PCBP2, La, unr hnRNP A1 |
|
Foot-and-mouth disease virus (FMDV) | PTB, ITAF45, La | |
Encephalomyocarditis cirus (EMCV) | PTB, La | |
Theiler’s murine encephalomyelitis virus (TMEV) | PTB | |
Porcine teschovirus serotype 1 (PTV-1) | ||
Potyviruses | Cowpea mosaic virus (CPMV) Tobacco etch virus (TEV) |
|
Flaviviruses | Hepatitis C virus (HCV) | PTB, PCBP2, La, hnRNP D, hnRNP L |
Bovine viral diarrhea virus (BVDV) Classical swine fever virus (CSFV) |
||
Dicistroviruses | Cricket paralysis virus (CrPV) Drosophila C virus (DCV) Plautia stali intestine virus (PSIV) |
|
Retroviruses | Human T-call lymphotropic virus 1 (HTLV-1) | PTB, La |
Moloney murine leukenia virus (MoMuLV) Rous sarcoma virus (RSV) Simian immunodeficiency virus (SIV) |
||
Human immunodeficiency virus type 1 (HIV) | La |
Some of the IRES elements identified in viral RNAs are shown, separated into DNA and RNA viruses, and including the virus family. Also shown are the known cellular IRES trans-acting factors (ITAFs) that function in translation for each particular viral IRES. Note that only non-canonical ITAFs are listed; this list does not include any canonical eukaryotic translation initiation factors (eIFs). Data compiled from [82,112,131,132].