Table 2.
The most abundantly represented transcripts in the A avenae cDNA library
| Non-redundant GenBank | ||||||
|---|---|---|---|---|---|---|
| No. | Cluster ID | ESTs | Best identity descriptor | Accession | E-value | C. elegans gene |
| 1 | AAC00129 | 81 | Actin [Panagrellus redivivus] | AAM47606 | 0.0 | M03F4.2 |
| 2 | AAC00161 | 73 | Hypothetical protein F42A10.7 [C. elegans] | NP_498341 | 4e-40 | F42A10.7a |
| 3 | AAC00061 | 71 | Small heat shock protein OV25-2 [Onchocerca volvulus] | P29779 | 5e-10 | F08H9.4 |
| 4 | AAC00128 | 64 | Collagen family member (col-144) [C. elegans] | NP_505374 | 1e-25 | B0222.6a |
| 5 | AAC00023 | 57 | Troponin C [C. brenneri] | ACD88888 | 1e-71 | F54C1.7 |
| 6 | AAC00091 | 57 | Tropomyosin [Heligmosomoides polygyrus] | ABV44405 | 2e-82 | Y105E8B.1a |
| 7 | AAC00187 | 32 | Cuticular collagen [Teladorsagia circumcincta] | CAA65506 | 3e-30 | T07H6.3 |
| 8 | AAC00105 | 27 | Hypothetical protein CBG24046 [C. briggsae] | CAE56371 | 2e-66 | F09F7.2a |
| 9 | AAC00123 | 24 | Novel | -- | -- | -- |
| 10 | AAC00255 | 24 | Novel | -- | -- | -- |
| 11 | AAC00048 | 23 | Temporarily assigned gene name family member [C. elegans] | NP_501440 | 1e-141 | T01B11.4 |
| 12 | AAC00088 | 23 | Novel | -- | -- | -- |
| 13 | AAC00109 | 23 | Hypothetical protein CBG15446 [C. briggsae] | XP_001677444 | 3e-43 | ZK721.2 |
| 14 | AAC00321 | 23 | Novel | -- | -- | -- |
| 15 | AAC00541 | 23 | SXP/RAL-2 family protein [Anisakis simplex] | BAF43534 | 2e-14 | ZK970.7 |
| 16 | AAC00269 | 19 | Hypothetical protein CBG02561 [C. briggsae] | XP_001679653 | 3e-08 | ZK84.1a |
| 17 | AAC00121 | 18 | Cytochrome c oxidase subunit I [Steinernema carpocapsae] | YP_026087 | 1e-153 | MTCE.26 |
| 18 | AAC00143 | 18 | Cuticle preprocollagen [Meloidogyne incognita] | AAC48358 | 9e-22 | F41F3.4 |
| 19 | AAC00163 | 17 | Phosphoenolpyruvate carboxykinase [Haemonchus contortus] | P29190 | 1e-151 | R11A5.4a |
| 20 | AAC00313 | 17 | ATP synthase subunit family member (atp-2) [C. elegans] | NP_498111 | 1e-149 | C34E10.6a |
| 21 | AAC00112 | 16 | Cytochrome c oxidase subunit III [Ascaris suum] | NP_006947 | 7e-70 | MTCE.23 |
| 22 | AAC00295 | 16 | Novel | -- | -- | -- |
| 23 | AAC00024 | 15 | Hypothetical protein CBG21920 [C. briggsae] | XP_001678358 | 2e-21 | R06C7.4a |
| 24 | AAC00265 | 15 | Novel | -- | -- | -- |
| 25 | AAC00148 | 14 | Novel | -- | -- | -- |
a C. elegans homolog has higher probability match than the best GenBank descriptor