Table 3.
Rotatable bonds used in the conformational analysis of crocacin A 8
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|---|---|---|---|---|
| Dihedral angle (°)a | Preferred valuesb | Dockedc | Jansen et al.d | 1sqxe |
| t1 | ±120 | 107.3 | ||
| t2 | ±120 | 108.3 | ||
| t3 | 180 | −143.9 | ||
| t4 | ±90or180 | 94.5 | ||
| t5 | 0 or 180 | 151.6 | ||
| t6 | 180 | 158.8 | ||
| t7 | 180 | 152.6 | ||
| t8 | 180 | −171.5 | ||
| t9 | ±120 | 139.2 | −120 | −171.9 |
| t10 | −60 | −70.2 | −60 | −75.6 |
| t11 | 180 | 173.9 | 180 | 174 |
| t12 | 180 | −171.6 | 180 | 169.1 |
| t13 | −90 | −112.8 | −60 | 131.2 |
Ester bonds were assumed to be trans.
The preferred rotamers for these bonds, as determined by conformational analysis and Cambridge Structural Database23 (CSD) searches.
The dihedral angles exhibited in the final binding model of crocacin A.
The dihedral angles determined by NMR24.
The dihedral angles for the equivalent bonds of stigmatellin 2 in the 1sqx structure.
