. Author manuscript; available in PMC: 2010 Oct 29.

Published in final edited form as: J Phys Chem B. 2009 Oct 29;113(43):14343–14354. doi: 10.1021/jp907375b

Table I.

CPU hours for six protein-peptide docking using two implicit-solvent models.

Model	ε(r)=4r Forty 2-ns trajectories	GBMV Forty 1-ns trajectories
System	ε(r)=4r Forty 2-ns trajectories	GBMV Forty 1-ns trajectories
PTP-phosphorylated peptide	1255.02	14738.52
YopH-phosphorylated peptide mimic	1142.88	13311.20
PTK-peptide	1203.75	15061.04
IGF-peptide	1208.44	14980.75
PKA-peptide	1497.91	17653.82
CDK-peptide	1097.17	13163.07