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. Author manuscript; available in PMC: 2009 Dec 1.
Published in final edited form as: Ann N Y Acad Sci. 2008 Dec;1148:1–28. doi: 10.1196/annals.1410.082

Table 1.

Transcription Factors and Nuclear Protein Related Genes

Probe Set ID UniGene ID UniGene Name 1×IMO Fold C (Up) Probe Set ID UniGene ID UniGene Name 6×IMO Fold C (Up)
1369765_at Rn.32936 achaete-scute complex homolog-like 1 12.65 1369765_at Rn.32936 achaete-scute complex homolog-like 1 30.99
1369268_at Rn.9664 activating transcription factor 3 (ATF3) 13.45 1369738_s_at Rn.10251 cAMP responsive element modulator 13.07
1367624_at Rn.2423 activating transcription factor 4 (ATF4) 2.29 1368321_at Rn.9096 early growth response 1 (Egr1) 8.09
1369737_at Rn.10251 cAMP responsive element modulator 39.82 1387306_a_at Rn.89235 early growth response 2 (Egr2) 2.72
1369738_s_at 22.5 1368775_at NA gonadotropin inducible ovarian TF 1 17.5
1368813_at Rn.6975 CCAAT/enhancer binding, δ 3.57 1387028_a_at Rn.2113 inhibitor of DNA binding 1 3.23
1387343_at 2.9 1375120_at Rn.22987 inhibitor of DNA binding 4 2.08
1368321_at Rn.9096 early growth response 1 (Egr1) 8.23 1370138_at Rn.21926 lymphoid enhancer binding factor 1 6.86
1368489_at Rn.11306 fos-like antigen 1 (Fra-1) 3.77 1368488_at Rn.54147 nuclear factor, interleukin 3, regulated 10.63
1387530_a_at Rn.10962 fos-like antigen 2 (Fra-2) 3.61 1387410_at Rn.88129 NR4A2 6.73
1368775_at NA gonadotropin inducible ovarian TF 1 32.06 1369067_at Rn.62694 NR4A3 54.05
1368726_a_at NA gonadotropin inducible ovarian TF 2 10.51 1373632_at Rn.8139 TAF9 RNA polymerase 3.03
1387270_at Rn.12188 hematopoietically expressed homeobox 3.58 1387169_at Rn.24106 transducin-like enhancer of split 3 3.76
1368546_at Rn.9802 HIV type I enhancer binding protein 2 2.64
1388587_at Rn.23638 immediate early response 3 2.91
1387028_a_at Rn.2113 inhibitor of DNA binding 1 3.52
1394022_at Rn.22987 inhibitor of DNA binding 4 2.82
1387788_at Rn.15806 Jun-B oncogene 7.83
1387260_at Rn.7719 Kruppel-like factor 4 (gut) 10.13
1370968_at Rn.2411 nuclear factor kappa B p105 subunit 2.73
1368488_at Rn.54147 nuclear factor, interleukin 3, regulated 15.43
1386935_at Rn.10000 NR4A1 8.85
1369007_at Rn.88129 NR4A2 6.17
1369067_at Rn.62694 NR4A3 97.62
1387200_at Rn.45339 oligodendrocyte transcription factor 1 2.12
1387684_at Rn.96181 peroxisome proliferator activated R δ 5.15
1370224_at Rn.10247 signal transducer and activator of T 3 2.38
1373632_at Rn.8139 TAF9 RNA polymerase II 2.05
1387169_at Rn.24106 transducin-like enhancer of split 3 2.97
1372211_at Rn.3818 v-maf 1.97
1387870_at Rn.82737 zinc finger protein 36 3.07

(Down) (Down)
1368870_at Rn.3272 inhibitor of DNA binding 2 2.62 1368376_at Rn.10712 NR0B2 5.48
1368073_at Rn.6396 interferon regulatory factor 1 2.58
1373471_at Rn.43927 ring finger protein 166 2.18
1387732_at Rn.64629 transcription termination factor 2.13
1387624_at Rn.10845 upstream transcription factor 1 3.17
1399006_at 2.58

Nuclear protein related (Up) Nuclear protein related (Up)

1382756_at Rn.6272 karyopherin alpha 2.65 1370004_at Rn.11098 H2A histone family, member Y 3.27
1368747_at Rn.11324 nucleoporin 98 3.69 1373032_at Rn.9453 musculoskeletal 4.34
1388198_at Rn.11099 nucleoporin p58 2.55
1367761_at Rn.2947 nudE nuclear distribution gene E 2.19
1387912_at Rn.3436 RNA helicase 4.83

Bold – Genes changed by both types of stress; Fold C – Fold change