TABLE 2.
smPB data results
The K and σ values obtained from fitting the experimental data (Fig. 4) to Equation 4 are tabulated below. The K and σ values measure the magnitude of the association constant and relative strength of the binding events. The values are subgrouped and given as proteins with unlabeled forked DNA (FkD-U) in Nos. 1–4, with no DNA in Nos. 5–8, and with Cy5-labeled forked DNA (FkD-Cy5) in Nos. 9–12. Along with K and σ values and the residuals, a measure of the goodness of fit was obtained. The root mean square error obtained for all the fittings was less than ± 0.02. gp59*, Alexa 555-labeled gp59.
No. | System | K | σ |
---|---|---|---|
1 | FkD-U + gp59* | 0.90 | 0.86 |
2 | FkD-U + gp59* + gp32 | 0.38 | 0.78 |
3 | FkD-U + gp59* + gp41 | 0.64 | 0.97 |
4 | FkD-U + gp59* + gp32 +gp41 | 0.68 | 1.2 |
5 | gp59* | 0.43 | 0.06 |
6 | gp59* + gp32 | 0.27 | 0.03 |
7 | gp59* + gp41 | 0.40 | 0.07 |
8 | gp59* + gp32 + gp41 | 0.43 | 0.06 |
9 | FkD-Cy5 + gp59* | 0.71 | 0.73 |
10 | FkD-Cy5 + gp59* + gp32 | 0.32 | 0.39 |
11 | FkD-Cy5 + gp59* + gp41 | 0.93 | 0.87 |