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. 2009 Aug 20;284(43):29283–29289. doi: 10.1074/jbc.M109.029926

TABLE 2.

smPB data results

The K and σ values obtained from fitting the experimental data (Fig. 4) to Equation 4 are tabulated below. The K and σ values measure the magnitude of the association constant and relative strength of the binding events. The values are subgrouped and given as proteins with unlabeled forked DNA (FkD-U) in Nos. 1–4, with no DNA in Nos. 5–8, and with Cy5-labeled forked DNA (FkD-Cy5) in Nos. 9–12. Along with K and σ values and the residuals, a measure of the goodness of fit was obtained. The root mean square error obtained for all the fittings was less than ± 0.02. gp59*, Alexa 555-labeled gp59.

No. System K σ
1 FkD-U + gp59* 0.90 0.86
2 FkD-U + gp59* + gp32 0.38 0.78
3 FkD-U + gp59* + gp41 0.64 0.97
4 FkD-U + gp59* + gp32 +gp41 0.68 1.2
5 gp59* 0.43 0.06
6 gp59* + gp32 0.27 0.03
7 gp59* + gp41 0.40 0.07
8 gp59* + gp32 + gp41 0.43 0.06
9 FkD-Cy5 + gp59* 0.71 0.73
10 FkD-Cy5 + gp59* + gp32 0.32 0.39
11 FkD-Cy5 + gp59* + gp41 0.93 0.87